About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55582PLEXIN
Paelopatides55583ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides55584ACROSIN-RELATED
Paelopatides55585ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Paelopatides555863-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE
Paelopatides55587REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides555883-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE
Paelopatides55589-
Paelopatides55590SLEI FAMILY PROTEIN
Paelopatides55591ATAXIN-7-LIKE PROTEIN 3
Paelopatides55592PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
Paelopatides55593PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
Paelopatides55594FUMARATE HYDRATASE-RELATED
Paelopatides55595CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides55596CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides55597G-PROTEIN COUPLED RECEPTOR
Paelopatides55599UNCHARACTERIZED
Paelopatides55600CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE
Paelopatides55601ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides55602RING FINGER PROTEIN 31-RELATED
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