About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides55542-
Paelopatides55543GH3 DOMAIN-CONTAINING PROTEIN
Paelopatides55544-
Paelopatides55545L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides55546-
Paelopatides55547NETRIN RECEPTOR UNC5
Paelopatides55548FI04643P-RELATED
Paelopatides55549-
Paelopatides55550FI04643P-RELATED
Paelopatides55551GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides55552REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55553COLLAGEN ALPHA
Paelopatides55554REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides55555ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides55556AGAP008170-PA
Paelopatides55557-
Paelopatides55558-
Paelopatides55559-
Paelopatides55560-
Paelopatides55561-
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