About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama16987PUTATIVE-RELATED
Ama16988CHARGED MULTIVESICULAR BODY PROTEIN
Ama16989
Ama16990REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Ama16991REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama16992ATP DEPENDENT LON PROTEASE FAMILY MEMBER
Ama16993
Ama16995SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Ama16996THYROTROPIN-RELEASING HORMONE RECEPTOR
Ama16998
Ama16999THYROTROPIN-RELEASING HORMONE RECEPTOR
Ama169_5db7b01aSYNTENIN RELATED
Ama17000
Ama17001
Ama17002PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama17003
Ama17005MIR DOMAIN-CONTAINING PROTEIN
Ama17006SODIUM-BILE ACID COTRANSPORTER
Ama17008UNCHARACTERIZED
Ama17009UNCHARACTERIZED
Ama17010
Ama17011
Ama17015
Ama17016RYANODINE RECEPTOR AND IP3 RECEPTOR
Ama17017
Ama17019
Ama17021MIR DOMAIN-CONTAINING PROTEIN
Ama17022BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
Ama17023GDAP1, ISOFORM A
Ama17025PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama17026L1 TRANSPOSABLE ELEMENT-RELATED
Ama17027RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Ama17030
Ama17031RHOMBOID-RELATED PROTEIN
Ama17032NNMT/PNMT/TEMT FAMILY MEMBER
Ama17033PUTATIVE-RELATED
Ama17035ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Ama17036SCD6 PROTEIN-RELATED
Ama17037TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4
Ama17038TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4
Ama17039
Ama17041
Ama17042
Ama17044
Ama17046
Ama17047SIMILAR TO HYPOTHETICAL PROTEIN FLJ20508
Ama17048
Ama17049
Ama17050SIMILAR TO HYPOTHETICAL PROTEIN FLJ20508
Ama17053FMRFAMIDE RECEPTOR-RELATED
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