About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50376EXPRESSED PROTEIN
Paelopatides50377-
Paelopatides50378NUCLEAR PROTEIN SKIP-RELATED
Paelopatides50379REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50380BUCENTAUR RELATED
Paelopatides50381L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides50382E3 UBIQUITIN-PROTEIN LIGASE TRIM
Paelopatides50383TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides50384STERILE20-LIKE KINASE, ISOFORM B-RELATED
Paelopatides50385-
Paelopatides50386-
Paelopatides50387-
Paelopatides50388GLYCOGEN SYNTHASE
Paelopatides50389GLYCOGEN SYNTHASE
Paelopatides50390GLYCOGEN SYNTHASE
Paelopatides50391-
Paelopatides50392B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides50393RAGULATOR COMPLEX PROTEIN LAMTOR4
Paelopatides50394MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED
Paelopatides50401DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
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