About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50273MULTICOPPER OXIDASE-RELATED
Paelopatides50274REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50275-
Paelopatides50276-
Paelopatides50277LARVAL STORAGE PROTEIN/PHENOLOXIDASE
Paelopatides50278LARVAL STORAGE PROTEIN/PHENOLOXIDASE
Paelopatides50279-
Paelopatides50280-
Paelopatides50281PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED
Paelopatides50283MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F
Paelopatides50284CUB DOMAIN-CONTAINING PROTEIN
Paelopatides50285NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides50286ZINC FINGER PROTEIN
Paelopatides50287REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50288NXPE FAMILY MEMBER
Paelopatides50289RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides50290-
Paelopatides50291-
Paelopatides50292REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50293-
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