About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50294ADIPOGENESIS REGULATORY FACTOR
Paelopatides50295-
Paelopatides50296-
Paelopatides50297AAA-FAMILY ATPASE
Paelopatides50298AAA-FAMILY ATPASE
Paelopatides50299B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides50300OPSIN
Paelopatides50301UNCHARACTERIZED
Paelopatides50302CYCLINS
Paelopatides50303PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT
Paelopatides50304ER LUMEN PROTEIN RETAINING RECEPTOR
Paelopatides50305TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides50306UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides50307-
Paelopatides50308CALCIUM-INDEPENDENT PHOSPHOLIPASE A2
Paelopatides50309GAG-RELATED PROTEIN
Paelopatides50310GLYCINE DEHYDROGENASE, DECARBOXYLATING
Paelopatides50311GLYCINE DEHYDROGENASE, DECARBOXYLATING
Paelopatides50312-
Paelopatides50313-
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