About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50253ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides50254ENZYMATIC POLYPROTEIN-RELATED
Paelopatides50255POL PROTEIN
Paelopatides50256REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50257-
Paelopatides50258-
Paelopatides50259-
Paelopatides50260SUSHI DOMAIN-CONTAINING PROTEIN 1
Paelopatides50261ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides50262UNCHARACTERIZED
Paelopatides50263PROTEIN CBG26694
Paelopatides50264-
Paelopatides50265TETRASPANIN
Paelopatides50266EXPRESSED PROTEIN
Paelopatides50267ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides50268DNAJ HOMOLOG SUBFAMILY C MEMBER 30, MITOCHONDRIAL
Paelopatides50269PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides50270AGAP008170-PA
Paelopatides50271BUCENTAUR RELATED
Paelopatides50272-
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