About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47327-
Paelopatides47328HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides47329OS05G0310600 PROTEIN
Paelopatides47330-
Paelopatides47331NATTERIN-4
Paelopatides47332-
Paelopatides47333TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR
Paelopatides47334RRNA METHYLTRANSFERASE 1, MITOCHONDRIAL
Paelopatides47335G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides47336DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1
Paelopatides47337-
Paelopatides47338TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides47339PARANEOPLASTIC ANTIGEN
Paelopatides47340PEROXISOMAL SARCOSINE OXIDASE
Paelopatides47341ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides47342PEROXISOMAL SARCOSINE OXIDASE
Paelopatides4734315-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Paelopatides4734415-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Paelopatides47345EPM2A-INTERACTING PROTEIN 1
Paelopatides47346-
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