About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47305EXPRESSED PROTEIN
Paelopatides47306EXPRESSED PROTEIN
Paelopatides47307-
Paelopatides47310-
Paelopatides47311-
Paelopatides47312TUMOR NECROSIS FACTOR INDUCED PROTEIN
Paelopatides47313KRAB AND ZINC FINGER DOMAIN-CONTAINING
Paelopatides47314UNCHARACTERIZED
Paelopatides47315-
Paelopatides47316ZGC:195170
Paelopatides47317-
Paelopatides47318PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides47319METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides47320FERROCHELATASE
Paelopatides47321FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides47322-
Paelopatides47323CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47324CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47325ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides47326REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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