About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47225PROTEIN CBG26694
Paelopatides47226ENDONUCLEASE-RELATED
Paelopatides47227CORONIN
Paelopatides47228UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
Paelopatides47229SNF2/RAD54 FAMILY MEMBER
Paelopatides47230SNF2/RAD54 FAMILY MEMBER
Paelopatides4723139S RIBOSOMAL PROTEIN L53, MITOCHONDRIAL
Paelopatides47232CORRINOID ADENOSYLTRANSFERASE
Paelopatides47233-
Paelopatides47234RPE-SPONDIN
Paelopatides47235MYOTONIC DYSTROPHY S/T KINASE-RELATED
Paelopatides47236BICD FAMILY-LIKE CARGO ADAPTER
Paelopatides47237PROTEIN ABHD11
Paelopatides47238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides47239OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Paelopatides47240OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Paelopatides47241-
Paelopatides47242UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides47243-
Paelopatides47244FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED
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