About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47145-
Paelopatides47146ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides47147-
Paelopatides47148TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Paelopatides47149GLYCOLIPID TRANSFER PROTEIN-RELATED
Paelopatides47150-
Paelopatides47151GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5
Paelopatides47152FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides47153PROTEIN CBG26694
Paelopatides47154SI:CH211-108C17.2-RELATED-RELATED
Paelopatides47155NETRIN RECEPTOR UNC5
Paelopatides47156NETRIN RECEPTOR UNC5
Paelopatides47157-
Paelopatides47158BONUS, ISOFORM C-RELATED
Paelopatides47159THAP DOMAIN-CONTAINING PROTEIN 6
Paelopatides47160BONUS, ISOFORM C-RELATED
Paelopatides47161BONUS, ISOFORM C-RELATED
Paelopatides47162-
Paelopatides47163ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides47164GLUTATHIONE S-TRANSFERASE
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