About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s018.g0413.t1NGD5/OSM-6/IFT52
Lsat_s018.g0414.t1SQUALENE MONOOXYGENASE
Lsat_s018.g0415.t1URIDINE KINASE
Lsat_s018.g0416.t1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Lsat_s018.g0417.t1
Lsat_s018.g0418.t1
Lsat_s018.g0419.t1PERIOSTIN-RELATED
Lsat_s018.g0420.t1PERIOSTIN-RELATED
Lsat_s018.g0421.t1
Lsat_s018.g0422.t1
Lsat_s018.g0423.t1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Lsat_s018.g0424.t1IG-LIKE DOMAIN-CONTAINING PROTEIN
Lsat_s018.g0425.t1
Lsat_s018.g0426.t1
Lsat_s018.g0427.t1-
Lsat_s018.g0428.t1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Lsat_s018.g0429.t1AGAP005329-PA
Lsat_s018.g0430.t1
Lsat_s018.g0431.t1
Lsat_s018.g0432.t1
Lsat_s018.g0433.t1UNCHARACTERIZED
Lsat_s018.g0434.t1
Lsat_s018.g0435.t1VOLTAGE-GATED POTASSIUM CHANNEL
Lsat_s018.g0436.t1
Lsat_s018.g0437.t1DYNACTIN 1-RELATED MICROTUBULE-BINDING
Lsat_s018.g0438.t1PROTEASOME ASSEMBLY CHAPERONE 3
Lsat_s018.g0439.t1TYROSINE-PROTEIN KINASE RECEPTOR
Lsat_s018.g0440.t1PHOSPHOLIPASE-RELATED
Lsat_s018.g0441.t1
Lsat_s018.g0442.t1ARSENICAL PUMP-DRIVING ATPASE ARSENITE-TRANSLOCATING ATPASE
Lsat_s018.g0443.t1E3 UBIQUITIN-PROTEIN LIGASE HECTD3
Lsat_s018.g0444.t1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Lsat_s018.g0445.t1
Lsat_s018.g0446.t1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Lsat_s018.g0447.t1UPF0478 PROTEIN YTXG
Lsat_s018.g0448.t1CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
Lsat_s018.g0449.t1-
Lsat_s018.g0450.t1UNCHARACTERIZED
Lsat_s018.g0451.t1SUPRABASAL-SPECIFIC PROTEIN SUPRABASIN
Lsat_s018.g0452.t1UNCHARACTERIZED
Lsat_s018.g0453.t1PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE
Lsat_s018.g0454.t1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Lsat_s018.g0455.t1-
Lsat_s018.g0456.t1MYOSIN
Lsat_s018.g0457.t1
Lsat_s018.g0458.t1SIGNAL PEPTIDE PEPTIDASE
Lsat_s018.g0459.t1
Lsat_s018.g0460.t1
Lsat_s018.g0461.t1REPETIN
Lsat_s018.g0462.t1
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