About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03619NETRIN RECEPTOR UNC5
Paelopatides03620ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides03623REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03624REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03625BUCENTAUR RELATED
Paelopatides03626-
Paelopatides03627DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
Paelopatides03628ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides03629BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides03632INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides03633CATION CHANNEL SPERM-ASSOCIATED PROTEIN 2
Paelopatides03634REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03635PROTEIN CBG26694
Paelopatides03636GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides03637GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides03638HEDGEHOG
Paelopatides03639REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03640CST COMPLEX SUBUNIT TEN1
Paelopatides03641-
Paelopatides03642-
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