About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03535ETS
Paelopatides03536-
Paelopatides03537-
Paelopatides03538-
Paelopatides03539GAG-RELATED PROTEIN
Paelopatides03541-
Paelopatides03542AP ENDONUCLEASE
Paelopatides03543-
Paelopatides03544REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides03545VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Paelopatides03547TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides03548SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides03549RIBOSOMAL PROTEIN S6 KINASE
Paelopatides03550REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03551DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Paelopatides03552DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Paelopatides03553-
Paelopatides03554-
Paelopatides03555-
Paelopatides03556STABILIZER OF AXONEMAL MICROTUBULES 2
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