About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03557L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides03558TYROSINE-PROTEIN KINASE
Paelopatides03561AMINO ACID TRANSPORTER
Paelopatides03562AMINO ACID TRANSPORTER
Paelopatides03563AMINO ACID TRANSPORTER
Paelopatides03564AMINO ACID TRANSPORTER
Paelopatides03565NETRIN RECEPTOR UNC5
Paelopatides03566PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides03567SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides03568SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides03569N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides03570PROTEIN CBG26694
Paelopatides03571ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides03572N-ACETYLGALACTOSAMINYLTRANSFERASE
Paelopatides03573N-ACETYLGALACTOSAMINYLTRANSFERASE
Paelopatides03574-
Paelopatides03575WD40 REPEAT PROTEIN 12, 37
Paelopatides03576CELL DIVISION PROTEIN KINASE
Paelopatides03577DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
Paelopatides03578OVOCHYMASE-RELATED
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