Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s013.g0298.t1 | KNIRPS-RELATED PROTEIN-RELATED |
Lsat_s013.g0299.t1 | RING ZINC FINGER PROTEIN |
Lsat_s013.g0300.t1 | P25 ALPHA-RELATED |
Lsat_s013.g0301.t1 | |
Lsat_s013.g0302.t1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
Lsat_s013.g0303.t1 | |
Lsat_s013.g0304.t1 | E3 UBIQUITIN-PROTEIN LIGASE COP1 |
Lsat_s013.g0305.t1 | SUCCINATE DEHYDROGENASE |
Lsat_s013.g0306.t1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Lsat_s013.g0307.t1 | PALMITOYLTRANSFERASE ZDHHC16 |
Lsat_s013.g0308.t1 | |
Lsat_s013.g0309.t1 | MONOCARBOXYLATE TRANSPORTER |
Lsat_s013.g0310.t1 | MONOCARBOXYLATE TRANSPORTER |
Lsat_s013.g0311.t1 | |
Lsat_s013.g0312.t1 | G-PROTEIN COUPLED RECEPTOR |
Lsat_s013.g0313.t1 | MONOCARBOXYLATE TRANSPORTER |
Lsat_s013.g0314.t1 | LIM/HOMEOBOX PROTEIN LHX |
Lsat_s013.g0315.t1 | GLR0591 PROTEIN |
Lsat_s013.g0316.t1 | |
Lsat_s013.g0317.t1 | |
Lsat_s013.g0318.t1 | GLR0591 PROTEIN |
Lsat_s013.g0319.t1 | NEUROPEPTIDES RECEPTOR |
Lsat_s013.g0320.t1 | G-PROTEIN COUPLED RECEPTOR |
Lsat_s013.g0321.t1 | G-PROTEIN COUPLED RECEPTOR |
Lsat_s013.g0322.t1 | G-PROTEIN COUPLED RECEPTOR |
Lsat_s013.g0323.t1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Lsat_s013.g0324.t1 | GLR0591 PROTEIN |
Lsat_s013.g0325.t1 | |
Lsat_s013.g0326.t1 | DNA REPAIR PROTEIN XRCC2 |
Lsat_s013.g0327.t1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
Lsat_s013.g0328.t1 | |
Lsat_s013.g0329.t1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Lsat_s013.g0330.t1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
Lsat_s013.g0331.t1 | |
Lsat_s013.g0332.t1 | |
Lsat_s013.g0333.t1 | |
Lsat_s013.g0334.t1 | LIM/HOMEOBOX PROTEIN LHX |
Lsat_s013.g0335.t1 | |
Lsat_s013.g0336.t1 | LIM/HOMEOBOX PROTEIN LHX |
Lsat_s013.g0337.t1 | |
Lsat_s013.g0338.t1 | LIM/HOMEOBOX PROTEIN LHX |
Lsat_s013.g0339.t1 | |
Lsat_s013.g0340.t1 | NECTIN-RELATED |
Lsat_s013.g0341.t1 | |
Lsat_s013.g0342.t1 | REGULATOR OF G-PROTEIN SIGNALING 3 |
Lsat_s013.g0343.t1 | NUCLEAR HORMONE RECEPTOR |
Lsat_s013.g0344.t1 | |
Lsat_s013.g0345.t1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L41 |
Lsat_s013.g0346.t1 | NHL REPEAT-CONTAINING PROTEIN-RELATED |
Lsat_s013.g0347.t1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |