About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s004.g0656.t1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Lsat_s004.g0657.t1-
Lsat_s004.g0658.t1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Lsat_s004.g0659.t1-
Lsat_s004.g0660.t1CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED
Lsat_s004.g0661.t1VACUOLAR MEMBRANE PROTEIN YPL162C
Lsat_s004.g0662.t1POLYCOMB GROUP PROTEIN
Lsat_s004.g0663.t1UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER
Lsat_s005.g0001.t1PROTEIN CBG17025
Lsat_s005.g0002.t1SPORE COAT PROTEIN SP85
Lsat_s005.g0003.t1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Lsat_s005.g0004.t1-
Lsat_s005.g0005.t1-
Lsat_s005.g0006.t1GLYCOPROTEIN HORMONE RECEPTOR
Lsat_s005.g0007.t1-
Lsat_s005.g0008.t1THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9
Lsat_s005.g0009.t1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 18
Lsat_s005.g0010.t1SEC61 SUBUNIT BETA
Lsat_s005.g0011.t1COILIN
Lsat_s005.g0012.t1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
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