Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s012.g0474.t1 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
| Lsat_s012.g0475.t1 | SODIUM-BILE ACID COTRANSPORTER |
| Lsat_s012.g0476.t1 | |
| Lsat_s012.g0477.t1 | N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE |
| Lsat_s012.g0478.t1 | THAP DOMAIN-CONTAINING PROTEIN 6 |
| Lsat_s012.g0479.t1 | |
| Lsat_s012.g0480.t1 | |
| Lsat_s012.g0481.t1 | COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN |
| Lsat_s012.g0482.t1 | |
| Lsat_s012.g0483.t1 | |
| Lsat_s012.g0484.t1 | OTU DOMAIN CONTAINING PROTEIN |
| Lsat_s012.g0485.t1 | LYSYL-TRNA SYNTHETASE |
| Lsat_s012.g0486.t1 | S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN |
| Lsat_s012.g0487.t1 | PX SERINE/THREONINE KINASE PXK |
| Lsat_s012.g0488.t1 | SPHINGOMYELINASE FAMILY MEMBER |
| Lsat_s012.g0489.t1 | ATM INTERACTOR |
| Lsat_s012.g0490.t1 | PEFLIN |
| Lsat_s012.g0491.t1 | PEFLIN |
| Lsat_s012.g0492.t1 | AAA DOMAIN-CONTAINING |
| Lsat_s012.g0493.t1 | UPF0545 PROTEIN C22ORF39 |
| Lsat_s012.g0494.t1 | N6-ADENOSINE-METHYLTRANSFERASE |
| Lsat_s012.g0495.t1 | |
| Lsat_s012.g0496.t1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
| Lsat_s012.g0497.t1 | MTG8 ETO EIGHT TWENTY ONE PROTEIN |
| Lsat_s012.g0498.t1 | |
| Lsat_s012.g0499.t1 | S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN |
| Lsat_s012.g0500.t1 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Lsat_s012.g0501.t1 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Lsat_s012.g0502.t1 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Lsat_s012.g0503.t1 | ANTIGEN BSP, PUTATIVE-RELATED |
| Lsat_s012.g0504.t1 | CHORDIN |
| Lsat_s012.g0505.t1 | |
| Lsat_s012.g0506.t1 | CHORDIN |
| Lsat_s012.g0507.t1 | |
| Lsat_s012.g0508.t1 | |
| Lsat_s012.g0509.t1 | ZINC FINGER PROTEIN |
| Lsat_s012.g0510.t1 | |
| Lsat_s012.g0511.t1 | |
| Lsat_s012.g0512.t1 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED |
| Lsat_s012.g0513.t1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
| Lsat_s012.g0514.t1 | E3 UBIQUITIN-PROTEIN LIGASE TRAIP |
| Lsat_s012.g0515.t1 | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL |
| Lsat_s012.g0516.t1 | UNCHARACTERIZED |
| Lsat_s012.g0517.t1 | |
| Lsat_s012.g0518.t1 | |
| Lsat_s012.g0519.t1 | SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG |
| Lsat_s012.g0520.t1 | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN |
| Lsat_s012.g0521.t1 | UBIQUITINATION FACTOR E4 |
| Lsat_s012.g0522.t1 | SOLUTE CARRIER FAMILY 35 |
| Lsat_s012.g0523.t1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
