Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s012.g0424.t1 | 60S RIBOSOMAL PROTEIN L22 |
| Lsat_s012.g0425.t1 | GALACTOSE-3-O-SULFOTRANSFERASE |
| Lsat_s012.g0426.t1 | |
| Lsat_s012.g0427.t1 | METALLOPROTEASE TLDD |
| Lsat_s012.g0428.t1 | SMALL INTEGRAL MEMBRANE PROTEIN 13 |
| Lsat_s012.g0429.t1 | SYNTROPHIN |
| Lsat_s012.g0430.t1 | MALONYL-COA ACP TRANSACYLASE, ACP-BINDING |
| Lsat_s012.g0431.t1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Lsat_s012.g0432.t1 | |
| Lsat_s012.g0433.t1 | BETA TRANSDUCIN-RELATED PROTEIN |
| Lsat_s012.g0434.t1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Lsat_s012.g0435.t1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
| Lsat_s012.g0436.t1 | |
| Lsat_s012.g0437.t1 | |
| Lsat_s012.g0438.t1 | |
| Lsat_s012.g0439.t1 | CREB/ATF BZIP TRANSCRIPTION FACTOR |
| Lsat_s012.g0440.t1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
| Lsat_s012.g0441.t1 | |
| Lsat_s012.g0442.t1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| Lsat_s012.g0443.t1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| Lsat_s012.g0444.t1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| Lsat_s012.g0445.t1 | |
| Lsat_s012.g0446.t1 | |
| Lsat_s012.g0447.t1 | GALACTOSE-3-O-SULFOTRANSFERASE |
| Lsat_s012.g0448.t1 | GALACTOSE-3-O-SULFOTRANSFERASE |
| Lsat_s012.g0449.t1 | |
| Lsat_s012.g0450.t1 | CTF8, CHROMOSOME TRANSMISSION FIDELITY FACTOR 8 HOMOLOG (S. CEREVISIAE) |
| Lsat_s012.g0451.t1 | PQ-LOOP REPEAT-CONTAINING PROTEIN 1-LIKE PROTEIN |
| Lsat_s012.g0452.t1 | SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED |
| Lsat_s012.g0453.t1 | SODIUM-BILE ACID COTRANSPORTER |
| Lsat_s012.g0454.t1 | SODIUM-BILE ACID COTRANSPORTER |
| Lsat_s012.g0455.t1 | |
| Lsat_s012.g0456.t1 | SODIUM-BILE ACID COTRANSPORTER |
| Lsat_s012.g0457.t1 | SODIUM-BILE ACID COTRANSPORTER |
| Lsat_s012.g0458.t1 | SODIUM-BILE ACID COTRANSPORTER |
| Lsat_s012.g0459.t1 | SODIUM-BILE ACID COTRANSPORTER |
| Lsat_s012.g0460.t1 | |
| Lsat_s012.g0461.t1 | SODIUM/HYDROGEN EXCHANGER |
| Lsat_s012.g0462.t1 | |
| Lsat_s012.g0463.t1 | |
| Lsat_s012.g0464.t1 | |
| Lsat_s012.g0465.t1 | |
| Lsat_s012.g0466.t1 | |
| Lsat_s012.g0467.t1 | |
| Lsat_s012.g0468.t1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| Lsat_s012.g0469.t1 | |
| Lsat_s012.g0470.t1 | |
| Lsat_s012.g0471.t1 | INNEXIN |
| Lsat_s012.g0472.t1 | BARDET-BIEDL SYNDROME 12 PROTEIN |
| Lsat_s012.g0473.t1 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
