Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s012.g0374.t1 | BTG3-ASSOCIATED NUCLEAR PROTEIN BANP |
| Lsat_s012.g0375.t1 | KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED |
| Lsat_s012.g0376.t1 | |
| Lsat_s012.g0377.t1 | LOC361192 |
| Lsat_s012.g0378.t1 | |
| Lsat_s012.g0379.t1 | |
| Lsat_s012.g0380.t1 | CADHERIN DOMAIN-CONTAINING PROTEIN |
| Lsat_s012.g0381.t1 | |
| Lsat_s012.g0382.t1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
| Lsat_s012.g0383.t1 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
| Lsat_s012.g0384.t1 | GOLGI INTEGRAL MEMBRANE PROTEIN 4 |
| Lsat_s012.g0385.t1 | INTERFERON ALPHA-INDUCIBLE PROTEIN 27 |
| Lsat_s012.g0386.t1 | PROPERDIN |
| Lsat_s012.g0387.t1 | PHOSPHOLIPID SCRAMBLASE-RELATED |
| Lsat_s012.g0388.t1 | PHOSPHOLIPID SCRAMBLASE-RELATED |
| Lsat_s012.g0389.t1 | PROTEIN RCC2 |
| Lsat_s012.g0390.t1 | COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17 |
| Lsat_s012.g0391.t1 | GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE |
| Lsat_s012.g0392.t1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
| Lsat_s012.g0393.t1 | ENGULFMENT AND CELL MOTILITY |
| Lsat_s012.g0394.t1 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 |
| Lsat_s012.g0395.t1 | CYSTEINE AND HISTIDINE-RICH PROTEIN 1 |
| Lsat_s012.g0396.t1 | |
| Lsat_s012.g0397.t1 | SELECTIN LIGAND RELATED |
| Lsat_s012.g0398.t1 | PAR-6-RELATED |
| Lsat_s012.g0399.t1 | TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE |
| Lsat_s012.g0400.t1 | CASEIN KINASE-RELATED |
| Lsat_s012.g0401.t1 | |
| Lsat_s012.g0402.t1 | UNCHARACTERIZED |
| Lsat_s012.g0403.t1 | |
| Lsat_s012.g0404.t1 | DREV PROTEIN |
| Lsat_s012.g0405.t1 | DIABETES AND OBESITY REGULATED, ISOFORM G |
| Lsat_s012.g0406.t1 | NAZO FAMILY MEMBER |
| Lsat_s012.g0407.t1 | INTERFERON ALPHA-INDUCIBLE PROTEIN 27 |
| Lsat_s012.g0408.t1 | |
| Lsat_s012.g0409.t1 | GUANYLYL CYCLASE |
| Lsat_s012.g0410.t1 | ASTEROID PROTEIN |
| Lsat_s012.g0411.t1 | SCHLAFEN |
| Lsat_s012.g0412.t1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Lsat_s012.g0413.t1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Lsat_s012.g0414.t1 | SI:CH211-171H4.7-RELATED |
| Lsat_s012.g0415.t1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Lsat_s012.g0416.t1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Lsat_s012.g0417.t1 | SCHLAFEN |
| Lsat_s012.g0418.t1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Lsat_s012.g0419.t1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Lsat_s012.g0420.t1 | |
| Lsat_s012.g0421.t1 | HEAT SHOCK REGULATED 2 |
| Lsat_s012.g0422.t1 | UNCHARACTERIZED |
| Lsat_s012.g0423.t1 | AP COMPLEX SUBUNIT MU |
