About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s013.g0048.t1PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
Lsat_s013.g0049.t1
Lsat_s013.g0050.t1
Lsat_s013.g0051.t1
Lsat_s013.g0052.t1
Lsat_s013.g0053.t1GLUTAREDOXIN-1
Lsat_s013.g0054.t1EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN
Lsat_s013.g0055.t1
Lsat_s013.g0056.t1
Lsat_s013.g0057.t1SI:CH211-171H4.7-RELATED
Lsat_s013.g0058.t1PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1
Lsat_s013.g0059.t1PROTEIN CBG05131
Lsat_s013.g0060.t1PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1
Lsat_s013.g0061.t1ATP-BINDING CASSETTE SUB-FAMILY C
Lsat_s013.g0062.t1POL PROTEIN
Lsat_s013.g0063.t1
Lsat_s013.g0064.t1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25
Lsat_s013.g0065.t1
Lsat_s013.g0066.t1
Lsat_s013.g0067.t1REGULATOR OF G-PROTEIN SIGNALING 3
Lsat_s013.g0068.t1REGULATOR OF G-PROTEIN SIGNALING 3
Lsat_s013.g0069.t1
Lsat_s013.g0070.t1REGULATOR OF G-PROTEIN SIGNALING 3
Lsat_s013.g0071.t1
Lsat_s013.g0072.t1REGULATOR OF G-PROTEIN SIGNALING 3
Lsat_s013.g0073.t1REGULATOR OF G-PROTEIN SIGNALING 3
Lsat_s013.g0074.t1
Lsat_s013.g0075.t1REGULATOR OF G-PROTEIN SIGNALING 3
Lsat_s013.g0076.t1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Lsat_s013.g0077.t160S RIBOSOMAL PROTEIN L35
Lsat_s013.g0078.t1ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC
Lsat_s013.g0079.t1
Lsat_s013.g0080.t1RAS GTPASE-RELATED
Lsat_s013.g0081.t1DENN DOMAIN-CONTAINING
Lsat_s013.g0082.t1PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
Lsat_s013.g0083.t1UNCHARACTERIZED
Lsat_s013.g0084.t1
Lsat_s013.g0085.t1
Lsat_s013.g0086.t1
Lsat_s013.g0087.t1
Lsat_s013.g0088.t1
Lsat_s013.g0089.t1
Lsat_s013.g0090.t1
Lsat_s013.g0091.t1
Lsat_s013.g0092.t1
Lsat_s013.g0093.t1
Lsat_s013.g0094.t1MUCIN-22
Lsat_s013.g0095.t1
Lsat_s013.g0096.t1
Lsat_s013.g0097.t1MITOCHONDRIAL RIBOSOMAL PROTEIN L37
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