Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s008.g0097.t1 | |
| Lsat_s008.g0098.t1 | |
| Lsat_s008.g0099.t1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| Lsat_s008.g0100.t1 | |
| Lsat_s008.g0101.t1 | |
| Lsat_s008.g0102.t1 | LIM DOMAIN-CONTAINING PROTEIN JUB |
| Lsat_s008.g0103.t1 | CHROMOSOME 20 ORF85 FAMILY MEMBER |
| Lsat_s008.g0104.t1 | RING FINGER AND SRY DOMAIN-CONTAINING |
| Lsat_s008.g0105.t1 | |
| Lsat_s008.g0106.t1 | RING FINGER AND SRY DOMAIN-CONTAINING |
| Lsat_s008.g0107.t1 | LOC361192 |
| Lsat_s008.g0108.t1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Lsat_s008.g0109.t1 | |
| Lsat_s008.g0110.t1 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
| Lsat_s008.g0111.t1 | UNCHARACTERIZED |
| Lsat_s008.g0112.t1 | TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED |
| Lsat_s008.g0113.t1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
| Lsat_s008.g0114.t1 | SULFITE REDUCTASE |
| Lsat_s008.g0115.t1 | |
| Lsat_s008.g0116.t1 | HEAT SHOCK FACTOR 2-BINDING PROTEIN |
| Lsat_s008.g0117.t1 | REPETIN |
| Lsat_s008.g0118.t1 | |
| Lsat_s008.g0119.t1 | BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN |
| Lsat_s008.g0120.t1 | ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR |
| Lsat_s008.g0121.t1 | BEIGE/BEACH-RELATED |
| Lsat_s008.g0122.t1 | NOT56 - RELATED |
| Lsat_s008.g0123.t1 | FOLATE RECEPTOR |
| Lsat_s008.g0124.t1 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| Lsat_s008.g0125.t1 | MOLTING PROTEIN MLT-4 |
| Lsat_s008.g0126.t1 | PROTEIN EVA-1 |
| Lsat_s008.g0127.t1 | DDB1- AND CUL4-ASSOCIATED FACTOR 17 |
| Lsat_s008.g0128.t1 | PROTEIN RER1 |
| Lsat_s008.g0129.t1 | |
| Lsat_s008.g0130.t1 | NUCLEAR RECEPTOR COACTIVATOR 5-RELATED |
| Lsat_s008.g0131.t1 | DEDICATOR OF CYTOKINESIS DOCK |
| Lsat_s008.g0132.t1 | ORF PROTEIN |
| Lsat_s008.g0133.t1 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE |
| Lsat_s008.g0134.t1 | MYOTUBULARIN-RELATED |
| Lsat_s008.g0135.t1 | TRANSMEMBRANE PROTEIN 246 |
| Lsat_s008.g0136.t1 | |
| Lsat_s008.g0137.t1 | |
| Lsat_s008.g0138.t1 | PHOSDUCIN-LIKE PROTEIN |
| Lsat_s008.g0139.t1 | RIBITOL-5-PHOSPHATE XYLOSYLTRANSFERASE 1 |
| Lsat_s008.g0140.t1 | THUMP DOMAIN-CONTAINING |
| Lsat_s008.g0141.t1 | FANCONI ANEMIA GROUP D2 PROTEIN |
| Lsat_s008.g0142.t1 | |
| Lsat_s008.g0143.t1 | UNCHARACTERIZED |
| Lsat_s008.g0144.t1 | BCR-ASSOCIATED PROTEIN, BAP |
| Lsat_s008.g0145.t1 | |
| Lsat_s008.g0146.t1 |
