About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40%57,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56327
Paelopatides56328DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides56329GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
Paelopatides56330ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides56332
Paelopatides56333PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides56334AMINO ACID TRANSPORTER
Paelopatides56335PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides56336GLUTATHIONE S-TRANSFERASE
Paelopatides56337L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides56338
Paelopatides56339PARANEOPLASTIC ANTIGEN
Paelopatides56340PARANEOPLASTIC ANTIGEN
Paelopatides56341TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides56342ENDONUCLEASE-RELATED
Paelopatides56343FERM DOMAIN-CONTAINING PROTEIN 4
Paelopatides56344PROTEIN YIPPEE-LIKE CG15309-RELATED
Paelopatides56345SERINE/THREONINE PROTEIN PHOSPHATASE
Paelopatides56346
Paelopatides56347RIBOSOMAL RNA METHYLTRANSFERASE
Paelopatides56348
Paelopatides56349UPF0722 PROTEIN C11ORF88
Paelopatides56350
Paelopatides56351DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3
Paelopatides56352
Paelopatides56353IFT57/HIPPI
Paelopatides56354IFT57/HIPPI
Paelopatides5635540S RIBOSOMAL PROTEIN S19
Paelopatides56356TRANSMEMBRANE PROTEIN 192
Paelopatides56357ETS
Paelopatides56358
Paelopatides56359ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides56360-
Paelopatides56361PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides56362
Paelopatides56364-
Paelopatides56365SERINE/THREONINE-PROTEIN KINASE
Paelopatides56367ACID PHOSPHATASE-RELATED
Paelopatides56368ACID PHOSPHATASE-RELATED
Paelopatides56369
Paelopatides56370REVERSE TRANSCRIPTASES
Paelopatides56371
Paelopatides56372REVERSE TRANSCRIPTASES
Paelopatides56374ACROSIN-RELATED
Paelopatides56375
Paelopatides56376
Paelopatides56377NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN
Paelopatides56378NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN
Paelopatides56379DNA REPAIR/RNA PROCESSING CPSF FAMILY
Paelopatides56380DNA REPAIR/RNA PROCESSING CPSF FAMILY
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