The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides55790 | FOLYLPOLYGLUTAMATE SYNTHASE-RELATED |
| Paelopatides55791 | HOMEO BOX HB9 LIKE A-RELATED |
| Paelopatides55792 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| Paelopatides55793 | MUCIN 12EA-RELATED |
| Paelopatides55794 | |
| Paelopatides55795 | |
| Paelopatides55796 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55797 | BONUS, ISOFORM C-RELATED |
| Paelopatides55798 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |
| Paelopatides55799 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Paelopatides55800 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides55801 | |
| Paelopatides55802 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides55803 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides55804 | PROTEIN CBG26694 |
| Paelopatides55805 | |
| Paelopatides55806 | SERINE-THREONINE PROTEIN KINASE |
| Paelopatides55807 | SERINE-THREONINE PROTEIN KINASE |
| Paelopatides55808 | REVERSE TRANSCRIPTASES |
| Paelopatides55809 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides55810 | |
| Paelopatides55811 | |
| Paelopatides55812 | ENDONUCLEASE-RELATED |
| Paelopatides55813 | ENZYMATIC POLYPROTEIN-RELATED |
| Paelopatides55814 | POL PROTEIN |
| Paelopatides55815 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55816 | ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1 |
| Paelopatides55817 | |
| Paelopatides55818 | KELCH PROTEIN |
| Paelopatides55819 | |
| Paelopatides55820 | |
| Paelopatides55821 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides55822 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER |
| Paelopatides55823 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
| Paelopatides55824 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55825 | TRANSMEMBRANE PROTEIN |
| Paelopatides55826 | DELTA ADAPTIN-RELATED |
| Paelopatides55827 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55828 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| Paelopatides55829 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13 |
| Paelopatides55830 | |
| Paelopatides55831 | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED |
| Paelopatides55832 | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED |
| Paelopatides55833 | LIPASE |
| Paelopatides55834 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| Paelopatides55835 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
| Paelopatides55836 | PROTEIN CBG26694 |
| Paelopatides55837 | |
| Paelopatides55838 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Paelopatides55840 | OXYSTEROL-BINDING PROTEIN-RELATED |
