The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides55415 | SI:DKEY-19B23.12-RELATED |
| Paelopatides55416 | RHO-TYPE GTPASE ACTIVATING PROTEIN |
| Paelopatides55418 | |
| Paelopatides55419 | GALACTOSE-3-O-SULFOTRANSFERASE |
| Paelopatides55420 | GALACTOSE-3-O-SULFOTRANSFERASE |
| Paelopatides55423 | |
| Paelopatides55424 | |
| Paelopatides55425 | KINESIN-LIKE PROTEIN KIN-12D |
| Paelopatides55426 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides55427 | |
| Paelopatides55428 | DUAL SPECIFICITY PROTEIN KINASE |
| Paelopatides55429 | |
| Paelopatides55430 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55431 | |
| Paelopatides55432 | |
| Paelopatides55433 | |
| Paelopatides55434 | |
| Paelopatides55435 | |
| Paelopatides55436 | |
| Paelopatides55437 | |
| Paelopatides55438 | PROTEIN CBG26694 |
| Paelopatides55439 | PROTEIN CBG26694 |
| Paelopatides55440 | |
| Paelopatides55441 | |
| Paelopatides55442 | |
| Paelopatides55443 | |
| Paelopatides55445 | |
| Paelopatides55446 | |
| Paelopatides55447 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
| Paelopatides55448 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN |
| Paelopatides55449 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55450 | |
| Paelopatides55451 | SERINE/THREONINE-PROTEIN KINASE |
| Paelopatides55452 | |
| Paelopatides55453 | |
| Paelopatides55454 | EYES ABSENT |
| Paelopatides55455 | RADIAL SPOKE HEAD 10 HOMOLOG B-RELATED |
| Paelopatides55456 | 40S RIBOSOMAL PROTEIN S12 |
| Paelopatides55457 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
| Paelopatides55458 | |
| Paelopatides55459 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides55460 | DEATH DOMAIN-CONTAINING PROTEIN |
| Paelopatides55461 | |
| Paelopatides55462 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL |
| Paelopatides55463 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55464 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55465 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides55466 | ENOLASE |
| Paelopatides55467 | BESTROPHIN |
| Paelopatides55468 | BESTROPHIN |
