About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s006.g0301.t1TRANSCRIPTIONAL ACTIVATOR DEMETER
Lsat_s006.g0302.t1
Lsat_s006.g0303.t1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Lsat_s006.g0304.t1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Lsat_s006.g0305.t1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Lsat_s006.g0306.t1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Lsat_s006.g0307.t1DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
Lsat_s006.g0308.t1MATING RESPONSE PROTEIN POI2
Lsat_s006.g0309.t1
Lsat_s006.g0310.t1
Lsat_s006.g0311.t1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Lsat_s006.g0312.t1ACYL-COA DESATURASE
Lsat_s006.g0313.t1LONG-CHAIN-FATTY-ACID--COA LIGASE
Lsat_s006.g0314.t1ORGANIC SOLUTE TRANSPORTER-RELATED
Lsat_s006.g0315.t1ALPHA-1,2 MANNOSYLTRANSFERASE KTR1
Lsat_s006.g0316.t1UNCHARACTERIZED
Lsat_s006.g0317.t1
Lsat_s006.g0318.t1TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
Lsat_s006.g0319.t1BAX INHIBITOR-RELATED
Lsat_s006.g0320.t1
Lsat_s006.g0321.t1GUANYLYL CYCLASE
Lsat_s006.g0322.t1
Lsat_s006.g0323.t1
Lsat_s006.g0324.t1
Lsat_s006.g0325.t1
Lsat_s006.g0326.t1
Lsat_s006.g0327.t1
Lsat_s006.g0328.t1
Lsat_s006.g0329.t1VWFC DOMAIN-CONTAINING PROTEIN
Lsat_s006.g0330.t1DNA POLYMERASE DELTA SUBUNIT 3
Lsat_s006.g0331.t1
Lsat_s006.g0332.t1WINGED HELIX DOMAIN-CONTAINING PROTEIN
Lsat_s006.g0333.t1-
Lsat_s006.g0334.t1
Lsat_s006.g0335.t1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Lsat_s006.g0336.t140S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11
Lsat_s006.g0337.t1ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6
Lsat_s006.g0338.t1CASPASE
Lsat_s006.g0339.t1INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Lsat_s006.g0340.t1
Lsat_s006.g0341.t1PROTEIN CBG10425
Lsat_s006.g0342.t1ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6
Lsat_s006.g0343.t1CASPASE
Lsat_s006.g0344.t1CASPASE
Lsat_s006.g0345.t1CASPASE
Lsat_s006.g0346.t160S RIBOSOMAL PROTEIN L10
Lsat_s006.g0347.t1SORTING NEXIN-29-RELATED
Lsat_s006.g0348.t1JOSEPHIN 1, 2
Lsat_s006.g0349.t1ELONGATION FACTOR TU-RELATED
Lsat_s006.g0350.t1
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