The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides44120 | |
| Paelopatides44121 | E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED |
| Paelopatides44122 | RE38146P |
| Paelopatides44123 | G PROTEIN-COUPLED RECEPTOR-RELATED |
| Paelopatides44124 | |
| Paelopatides44125 | G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN |
| Paelopatides44126 | SELENOPROTEIN O |
| Paelopatides44127 | SELENOPROTEIN O |
| Paelopatides44128 | PROTEIN ADENYLYLTRANSFERASE SELO, MITOCHONDRIAL |
| Paelopatides44129 | |
| Paelopatides44130 | |
| Paelopatides44131 | |
| Paelopatides44132 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides44133 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides44134 | |
| Paelopatides44135 | PROTEIN FAM47B |
| Paelopatides44136 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| Paelopatides44137 | |
| Paelopatides44138 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
| Paelopatides44139 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| Paelopatides44140 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| Paelopatides44141 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| Paelopatides44142 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides44143 | PROTEIN CBG16428 |
| Paelopatides44144 | |
| Paelopatides44145 | SLR5058 PROTEIN |
| Paelopatides44146 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides44147 | |
| Paelopatides44148 | RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN |
| Paelopatides44149 | RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN |
| Paelopatides44150 | RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN |
| Paelopatides44151 | |
| Paelopatides44152 | |
| Paelopatides44153 | |
| Paelopatides44154 | S -2-HYDROXY-ACID OXIDASE-RELATED |
| Paelopatides44155 | S -2-HYDROXY-ACID OXIDASE-RELATED |
| Paelopatides44156 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides44157 | |
| Paelopatides44158 | |
| Paelopatides44159 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
| Paelopatides44160 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
| Paelopatides44161 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| Paelopatides44162 | REPETIN |
| Paelopatides44163 | GALACTOSE-3-O-SULFOTRANSFERASE |
| Paelopatides44164 | NXPE FAMILY MEMBER |
| Paelopatides44165 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides44166 | GALACTOSE-3-O-SULFOTRANSFERASE |
| Paelopatides44167 | |
| Paelopatides44169 | BTB POZ DOMAIN CONTAINING 12 |
| Paelopatides44170 | BTB POZ DOMAIN CONTAINING 12 |
