The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides41834 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Paelopatides41835 | |
| Paelopatides41836 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides41837 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Paelopatides41838 | 28S RIBOSOMAL PROTEIN S34, MITOCHONDRIAL |
| Paelopatides41839 | PRE-MRNA SPLICING FACTOR PRP31 |
| Paelopatides41841 | |
| Paelopatides41842 | |
| Paelopatides41843 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
| Paelopatides41844 | PROTEIN CBG26694 |
| Paelopatides41845 | PROTEIN CBG26694 |
| Paelopatides41846 | PROTEIN CBG26694 |
| Paelopatides41847 | MALIC ENZYME-RELATED |
| Paelopatides41848 | NUCLEAR FACTOR INTERLEUKIN-3-REGULATED PROTEIN |
| Paelopatides41849 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides41850 | N-LYSINE METHYLTRANSFERASE KMT5A |
| Paelopatides41851 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides41852 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides41853 | |
| Paelopatides41854 | |
| Paelopatides41855 | |
| Paelopatides41856 | RETROTRANSPOSON |
| Paelopatides41857 | |
| Paelopatides41858 | |
| Paelopatides41859 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides41860 | |
| Paelopatides41861 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Paelopatides41862 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Paelopatides41863 | |
| Paelopatides41864 | SI:CH211-171H4.7-RELATED |
| Paelopatides41865 | SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20 |
| Paelopatides41866 | MYC PROTO-ONCOGENE |
| Paelopatides41867 | |
| Paelopatides41868 | TRNA DIMETHYLALLYLTRANSFERASE |
| Paelopatides41869 | |
| Paelopatides41870 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides41871 | |
| Paelopatides41872 | |
| Paelopatides41873 | LIPID PHOSPHATE PHOSPHATASE |
| Paelopatides41874 | |
| Paelopatides41875 | |
| Paelopatides41876 | GLUCOSE INHIBITED DIVISION PROTEIN A |
| Paelopatides41877 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
| Paelopatides41878 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Paelopatides41879 | |
| Paelopatides41880 | DNA POLYMERASE |
| Paelopatides41881 | SERINE/THREONINE/TYROSINE-INTERACTING-LIKE PROTEIN 1 |
| Paelopatides41882 | OXYGENASE-RELATED |
| Paelopatides41883 | PROTEIN CBG26694 |
| Paelopatides41884 |
