Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_037151-T1 | TRANSLATION MACHINERY-ASSOCIATED PROTEIN 7 |
OS493_037152-T1 | ATP SYNTHASE GAMMA CHAIN |
OS493_037154-T1 | ATP SYNTHASE GAMMA CHAIN |
OS493_037155-T1 | SH3 ADAPTER PROTEIN SPIN90 NCK INTERACTING PROTEIN WITH SH3 DOMAIN |
OS493_037156-T1 | SH3 ADAPTER PROTEIN SPIN90 NCK INTERACTING PROTEIN WITH SH3 DOMAIN |
OS493_037158-T1 | CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2 |
OS493_037159-T1 | SOLUTE CARRIER FAMILY 35 |
OS493_037160-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_037161-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_037162-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_037163-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_037164-T1 | MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B |
OS493_037165-T1 | |
OS493_037166-T1 | |
OS493_037167-T1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_037169-T1 | |
OS493_037170-T1 | PROTEIN FAM72A-RELATED |
OS493_037171-T1 | HISTONE H4 |
OS493_037172-T1 | |
OS493_037173-T1 | |
OS493_037174-T1 | |
OS493_037175-T1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_037176-T1 | |
OS493_037178-T1 | |
OS493_037179-T1 | |
OS493_037180-T1 | MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK |
OS493_037181-T1 | H2.0-LIKE HOMEOBOX PROTEIN |
OS493_037183-T1 | FORKHEAD BOX PROTEIN |
OS493_037184-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 |
OS493_037186-T1 | DYNEIN LIGHT CHAIN ROADBLOCK |
OS493_037187-T1 | YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP |
OS493_037188-T1 | |
OS493_037189-T1 | |
OS493_037190-T1 | TUBULIN FOLDING COFACTOR C |
OS493_037191-T1 | PROTEIN FAM207A |
OS493_037192-T1 | |
OS493_037193-T1 | APOPTOSIS-INDUCING FACTOR 1 |
OS493_037194-T1 | BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY |
OS493_037195-T1 | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS |
OS493_037196-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_037197-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_037199-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_037200-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_037202-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_037203-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_037204-T1 | |
OS493_037205-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_037206-T1 | POLY ADP-RIBOSE GLYCOHYDROLASE |
OS493_037207-T1 | CALCIUM BINDING PROTEINS |
OS493_037208-T1 | RHO GUANINE EXCHANGE FACTOR-RELATED |