About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014809-T1BINDING OXIDOREDUCTASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G17690)-RELATED
OS493_014810-T139S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL
OS493_014811-T1LIM/HOMEOBOX PROTEIN LHX
OS493_014812-T1FI19480P1
OS493_014813-T1CADHERIN-23
OS493_014814-T1YTH YT521-B HOMOLOGY DOMAIN-CONTAINING
OS493_014815-T1CAT EYE SYNDROME CRITICAL REGION PROTEIN 6
OS493_014816-T1LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED
OS493_014817-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
OS493_014818-T1DYNEIN ASSEMBLY FACTOR 5, AXONEMAL
OS493_014819-T1KELCH DOMAIN-CONTAINING PROTEIN 10
OS493_014820-T1FK506-BINDING PROTEIN 15
OS493_014821-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_014823-T1CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
OS493_014824-T1-
OS493_014825-T1-
OS493_014826-T1RGPR-RELATED
OS493_014827-T1-
OS493_014828-T1-
OS493_014829-T1-
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