About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_037321-T1
OS493_037322-T1
OS493_037323-T1
OS493_037324-T1
OS493_037325-T1
OS493_037326-T1
OS493_037327-T1
OS493_037328-T1
OS493_037329-T1
OS493_037330-T1
OS493_037331-T1
OS493_037332-T1
OS493_037333-T1
OS493_037334-T1
OS493_037335-T1
OS493_037336-T1
OS493_037337-T1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
OS493_037338-T1INTELECTIN
OS493_037339-T1
OS493_037340-T1
OS493_037341-T1SERINE-THREONINE PROTEIN KINASE
OS493_037342-T1INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
OS493_037343-T1INTELECTIN
OS493_037344-T1COLLAGEN ALPHA
OS493_037345-T1COLLAGEN ALPHA
OS493_037346-T1MRNA-CAPPING ENZYME
OS493_037347-T1SOLUTE CARRIER FAMILY 10 MEMBER 7
OS493_037348-T1
OS493_037349-T1TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
OS493_037350-T1PROTEIN ZWILCH HOMOLOG
OS493_037351-T1
OS493_037352-T1PROTEIN ZWILCH HOMOLOG
OS493_037353-T1
OS493_037354-T1GLUTAMINASE
OS493_037355-T1MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28
OS493_037356-T1HEPARAN SULFATE 2-O-SULFOTRANSFERASE
OS493_037357-T1
OS493_037358-T1OXYSTEROL-BINDING PROTEIN-RELATED
OS493_037359-T1OXYSTEROL-BINDING PROTEIN-RELATED
OS493_037360-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
OS493_037361-T1LIPASE
OS493_037362-T1LIPASE
OS493_037363-T1UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX ASSEMBLY FACTOR 1 FAMILY MEMBER
OS493_037364-T1
OS493_037365-T1TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
OS493_037366-T1TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
OS493_037367-T1BASIGIN RELATED
OS493_037368-T1
OS493_037371-T1BASIGIN RELATED
OS493_037374-T1BASIGIN RELATED
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