About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_037484-T1
OS493_037485-T1
OS493_037486-T1VASCULAR CELL ADHESION MOLECULE 1
OS493_037487-T1PROTEIN SIDEKICK
OS493_037488-T1
OS493_037489-T1SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT
OS493_037491-T1
OS493_037492-T1UNCHARACTERIZED
OS493_037493-T1
OS493_037494-T1UNCHARACTERIZED
OS493_037496-T1
OS493_037497-T1UNCHARACTERIZED
OS493_037498-T1UNCHARACTERIZED
OS493_037499-T1
OS493_037500-T1BATTENIN
OS493_037501-T1LYSOSOMAL-ASSOCIATED TRANSMEMBRANE PROTEIN
OS493_037502-T13-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
OS493_037503-T1PHOSPHATASE AND ACTIN REGULATOR PHACTR
OS493_037504-T1UNCHARACTERIZED
OS493_037505-T1MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
OS493_037506-T1
OS493_037507-T1
OS493_037508-T1
OS493_037509-T1
OS493_037510-T1COFILIN-RELATED
OS493_037511-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_037512-T1
OS493_037513-T1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
OS493_037514-T1
OS493_037515-T1ACID CLUSTER PROTEIN 33
OS493_037516-T1
OS493_037517-T1
OS493_037518-T1
OS493_037519-T1
OS493_037520-T1
OS493_037521-T1
OS493_037522-T1
OS493_037523-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_037524-T1
OS493_037525-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_037526-T1I[[H]] CHANNEL, ISOFORM E
OS493_037527-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_037528-T1PROTEIN-TYROSINE SULFOTRANSFERASE 2
OS493_037529-T1PROTEIN-TYROSINE SULFOTRANSFERASE 2
OS493_037530-T1PROTEIN-TYROSINE SULFOTRANSFERASE 2
OS493_037531-T1PROTEIN-TYROSINE SULFOTRANSFERASE 2
OS493_037532-T1
OS493_037533-T1
OS493_037534-T1
OS493_037535-T1
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