Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_037642-T1 | |
OS493_037643-T1 | |
OS493_037644-T1 | |
OS493_037645-T1 | |
OS493_037646-T1 | |
OS493_037647-T1 | |
OS493_037648-T1 | |
OS493_037650-T1 | |
OS493_037651-T1 | |
OS493_037653-T1 | |
OS493_037654-T1 | |
OS493_037655-T1 | DNA HELICASE RECQ FAMILY MEMBER |
OS493_037656-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_037657-T1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
OS493_037658-T1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
OS493_037659-T1 | REGULATOR OF CHROMOSOME CONDENSATION |
OS493_037660-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_037661-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_037662-T1 | C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180 |
OS493_037663-T1 | S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE |
OS493_037665-T1 | |
OS493_037666-T1 | AGAP009604-PA |
OS493_037667-T1 | GLUTAMINE AMIDOTRANSFERASE YLR126C-RELATED |
OS493_037668-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G |
OS493_037670-T1 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
OS493_037671-T1 | S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE |
OS493_037672-T1 | RNA BINDING PROTEIN |
OS493_037673-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
OS493_037676-T1 | CERAMIDE GLUCOSYLTRANSFERASE |
OS493_037677-T1 | TRANSMEMBRANE PROTEIN CCDC163 |
OS493_037679-T1 | RWD DOMAIN-CONTAINING PROTEIN 3 |
OS493_037680-T1 | DYNEIN 2 LIGHT INTERMEDIATE CHAIN, ISOFORM 2 |
OS493_037681-T1 | |
OS493_037683-T1 | TYROSINE-PROTEIN KINASE |
OS493_037684-T1 | |
OS493_037685-T1 | SENTRIN/SUMO-SPECIFIC PROTEASE |
OS493_037686-T1 | CYSTEINE-RICH HYDROPHOBIC DOMAIN PROTEIN BRAIN X-LINKED PROTEIN |
OS493_037687-T1 | HISTONE PARYLATION FACTOR 1 |
OS493_037688-T1 | PROTEIN ZERKNUELLT 1-RELATED |
OS493_037689-T1 | PROTEIN ZERKNUELLT 1-RELATED |
OS493_037690-T1 | PROTEASOME MATURATION PROTEIN UMP1 |
OS493_037691-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
OS493_037692-T1 | 2-OXO-4-HYDROXY-4-CARBOXY-5-UREIDOIMIDAZOLINE DECARBOXYLASE-RELATED |
OS493_037693-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_037694-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_037695-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_037696-T1 | BASIGIN RELATED |
OS493_037699-T1 | |
OS493_037701-T1 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
OS493_037702-T1 |