About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_037642-T1
OS493_037643-T1
OS493_037644-T1
OS493_037645-T1
OS493_037646-T1
OS493_037647-T1
OS493_037648-T1
OS493_037650-T1
OS493_037651-T1
OS493_037653-T1
OS493_037654-T1
OS493_037655-T1DNA HELICASE RECQ FAMILY MEMBER
OS493_037656-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_037657-T1FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1
OS493_037658-T1FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1
OS493_037659-T1REGULATOR OF CHROMOSOME CONDENSATION
OS493_037660-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_037661-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_037662-T1C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
OS493_037663-T1S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE
OS493_037665-T1
OS493_037666-T1AGAP009604-PA
OS493_037667-T1GLUTAMINE AMIDOTRANSFERASE YLR126C-RELATED
OS493_037668-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G
OS493_037670-T1N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
OS493_037671-T1S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE
OS493_037672-T1RNA BINDING PROTEIN
OS493_037673-T1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
OS493_037676-T1CERAMIDE GLUCOSYLTRANSFERASE
OS493_037677-T1TRANSMEMBRANE PROTEIN CCDC163
OS493_037679-T1RWD DOMAIN-CONTAINING PROTEIN 3
OS493_037680-T1DYNEIN 2 LIGHT INTERMEDIATE CHAIN, ISOFORM 2
OS493_037681-T1
OS493_037683-T1TYROSINE-PROTEIN KINASE
OS493_037684-T1
OS493_037685-T1SENTRIN/SUMO-SPECIFIC PROTEASE
OS493_037686-T1CYSTEINE-RICH HYDROPHOBIC DOMAIN PROTEIN BRAIN X-LINKED PROTEIN
OS493_037687-T1HISTONE PARYLATION FACTOR 1
OS493_037688-T1PROTEIN ZERKNUELLT 1-RELATED
OS493_037689-T1PROTEIN ZERKNUELLT 1-RELATED
OS493_037690-T1PROTEASOME MATURATION PROTEIN UMP1
OS493_037691-T1SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
OS493_037692-T12-OXO-4-HYDROXY-4-CARBOXY-5-UREIDOIMIDAZOLINE DECARBOXYLASE-RELATED
OS493_037693-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_037694-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_037695-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_037696-T1BASIGIN RELATED
OS493_037699-T1
OS493_037701-T1DEATH DOMAIN-CONTAINING PROTEIN CRADD
OS493_037702-T1
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