Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_037703-T1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 5 |
OS493_037704-T1 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A |
OS493_037705-T1 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A |
OS493_037709-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_037710-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_037711-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_037712-T1 | |
OS493_037713-T1 | |
OS493_037714-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_037715-T1 | |
OS493_037716-T1 | |
OS493_037717-T1 | |
OS493_037718-T1 | |
OS493_037719-T1 | |
OS493_037720-T1 | AMINOACYLASE-1 |
OS493_037722-T1 | HISTONE DEACETYLASE HDAC1-RELATED |
OS493_037723-T1 | HISTONE DEACETYLASE HDAC1-RELATED |
OS493_037724-T1 | |
OS493_037725-T1 | CAVEOLIN |
OS493_037726-T1 | |
OS493_037727-T1 | |
OS493_037728-T1 | |
OS493_037729-T1 | PROTEIN DD3-3 |
OS493_037730-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED |
OS493_037731-T1 | 3'-5' EXONUCLEASE ERI1-RELATED |
OS493_037732-T1 | UNNAMED PRODUCT |
OS493_037733-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED |
OS493_037734-T1 | |
OS493_037735-T1 | DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 |
OS493_037736-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED |
OS493_037737-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED |
OS493_037739-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_037740-T1 | |
OS493_037741-T1 | |
OS493_037742-T1 | |
OS493_037743-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_037744-T1 | |
OS493_037745-T1 | |
OS493_037746-T1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
OS493_037747-T1 | MYB-LIKE PROTEIN V |
OS493_037748-T1 | RHAMNOSYL O-METHYLTRANSFERASE |
OS493_037749-T1 | |
OS493_037750-T1 | RHAMNOSYL O-METHYLTRANSFERASE |
OS493_037751-T1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
OS493_037753-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_037754-T1 | |
OS493_037755-T1 | |
OS493_037756-T1 | |
OS493_037757-T1 | NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK-LIKE PROTEIN |
OS493_037758-T1 |