About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_037866-T1
OS493_037867-T1
OS493_037868-T1
OS493_037869-T1SOLUTE CARRIER FAMILY 39 ZINC TRANSPORTER , MEMBER 9-RELATED
OS493_037870-T1
OS493_037871-T1SOLUTE CARRIER FAMILY 39 ZINC TRANSPORTER , MEMBER 9-RELATED
OS493_037872-T1THROMBOSPONDIN-TYPE LAMININ G DOMAIN AND EAR REPEAT-CONTAINING
OS493_037873-T1
OS493_037874-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_037875-T1
OS493_037877-T1
OS493_037878-T1UNCHARACTERIZED
OS493_037879-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_037880-T1
OS493_037881-T1
OS493_037882-T1
OS493_037883-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_037884-T1TYROSINE-PROTEIN KINASE
OS493_037885-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_037886-T1
OS493_037887-T1RETICULOCALBIN
OS493_037888-T1TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
OS493_037889-T1TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
OS493_037890-T1
OS493_037891-T1TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
OS493_037892-T1TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
OS493_037893-T1
OS493_037894-T1TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
OS493_037895-T1
OS493_037896-T1UNCHARACTERIZED
OS493_037897-T1
OS493_037898-T1
OS493_037899-T1GLYCOPROTEIN HORMONE RECEPTOR
OS493_037900-T1
OS493_037901-T1ADP-RIBOSYLGLYCOHYDROLASE
OS493_037902-T1
OS493_037903-T1
OS493_037904-T1COLIPASE
OS493_037905-T1
OS493_037906-T1
OS493_037907-T1
OS493_037908-T1
OS493_037909-T1
OS493_037910-T1
OS493_037911-T1
OS493_037912-T1
OS493_037913-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_037914-T1
OS493_037915-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_037916-T1REGULATOR OF CHROMOSOME CONDENSATION
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