About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015075-T1REACTIVE OXYGEN SPECIES MODULATOR 1
OS493_015076-T1MRNA-CAPPING ENZYME
OS493_015077-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_015078-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_015079-T1NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
OS493_015080-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 189
OS493_015082-T1OS05G0521000 PROTEIN
OS493_015083-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_015084-T1WD REPEAT-CONTAINING PROTEIN 11
OS493_015085-T1FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1
OS493_015086-T1MITOFERRIN-1-RELATED
OS493_015087-T1SUPPRESSOR OF FUSED
OS493_015088-T1BIORIENTATION OF CHROMOSOMES IN CELL DIVISION 1 FAMILY MEMBER
OS493_015089-T1-
OS493_015090-T1UNCHARACTERIZED
OS493_015091-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_015092-T1FIBRINOGEN ALPHA CHAIN
OS493_015093-T1ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
OS493_015094-T1UNCHARACTERIZED
OS493_015095-T1SOX TRANSCRIPTION FACTOR
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