About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_037917-T1
OS493_037918-T1CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA
OS493_037919-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_037920-T1POU DOMAIN
OS493_037921-T1ZINC FINGER RNA-BINDING PROTEIN
OS493_037924-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
OS493_037926-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_037928-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_037929-T1
OS493_037930-T1
OS493_037931-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_037932-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_037933-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_037934-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_037935-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_037936-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_037937-T1LIM ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED
OS493_037938-T1
OS493_037939-T1
OS493_037940-T1
OS493_037941-T1HOMEO BOX HB9 LIKE A-RELATED
OS493_037943-T1COLLAGEN
OS493_037944-T1COLLAGEN
OS493_037945-T1
OS493_037946-T1
OS493_037947-T1
OS493_037948-T1
OS493_037949-T1
OS493_037950-T1CD59 GLYCOPROTEIN
OS493_037952-T1CD59 GLYCOPROTEIN
OS493_037954-T1CD59 GLYCOPROTEIN
OS493_037955-T1
OS493_037957-T1
OS493_037958-T1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
OS493_037959-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_037960-T1
OS493_037961-T1
OS493_037962-T1
OS493_037963-T1
OS493_037964-T1
OS493_037967-T1
OS493_037968-T1
OS493_037970-T1
OS493_037972-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
OS493_037973-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
OS493_037974-T1OVOCHYMASE-RELATED
OS493_037975-T1CYTOCHROME C OXIDASE POLYPEPTIDE 7A
OS493_037976-T1CYTOCHROME C OXIDASE POLYPEPTIDE 7A
OS493_037977-T1OVOCHYMASE-RELATED
OS493_037978-T1OROTATE PHOSPHORIBOSYLTRANSFERASE
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