Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_037917-T1 | |
OS493_037918-T1 | CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA |
OS493_037919-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_037920-T1 | POU DOMAIN |
OS493_037921-T1 | ZINC FINGER RNA-BINDING PROTEIN |
OS493_037924-T1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
OS493_037926-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_037928-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_037929-T1 | |
OS493_037930-T1 | |
OS493_037931-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_037932-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_037933-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_037934-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_037935-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_037936-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_037937-T1 | LIM ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_037938-T1 | |
OS493_037939-T1 | |
OS493_037940-T1 | |
OS493_037941-T1 | HOMEO BOX HB9 LIKE A-RELATED |
OS493_037943-T1 | COLLAGEN |
OS493_037944-T1 | COLLAGEN |
OS493_037945-T1 | |
OS493_037946-T1 | |
OS493_037947-T1 | |
OS493_037948-T1 | |
OS493_037949-T1 | |
OS493_037950-T1 | CD59 GLYCOPROTEIN |
OS493_037952-T1 | CD59 GLYCOPROTEIN |
OS493_037954-T1 | CD59 GLYCOPROTEIN |
OS493_037955-T1 | |
OS493_037957-T1 | |
OS493_037958-T1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
OS493_037959-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_037960-T1 | |
OS493_037961-T1 | |
OS493_037962-T1 | |
OS493_037963-T1 | |
OS493_037964-T1 | |
OS493_037967-T1 | |
OS493_037968-T1 | |
OS493_037970-T1 | |
OS493_037972-T1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_037973-T1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_037974-T1 | OVOCHYMASE-RELATED |
OS493_037975-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE 7A |
OS493_037976-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE 7A |
OS493_037977-T1 | OVOCHYMASE-RELATED |
OS493_037978-T1 | OROTATE PHOSPHORIBOSYLTRANSFERASE |