About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_6175-2.36CYTOCHROME B5
Bpl_scaf_6175-2.6SUGAR NUCLEOTIDE EPIMERASE RELATED
Bpl_scaf_61763-0.0
Bpl_scaf_61763-0.14
Bpl_scaf_61763-0.7EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
Bpl_scaf_61776-0.3RNA BINDING PROTEIN
Bpl_scaf_61776-0.6
Bpl_scaf_61776-0.7TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL
Bpl_scaf_61795-0.11
Bpl_scaf_61795-0.2SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Bpl_scaf_61795-0.8
Bpl_scaf_61800-0.14CELL SURFACE A33 ANTIGEN
Bpl_scaf_61800-0.15
Bpl_scaf_61800-0.17
Bpl_scaf_61807-0.13BONUS, ISOFORM C-RELATED
Bpl_scaf_61807-0.20N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
Bpl_scaf_61807-0.21N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
Bpl_scaf_61815-0.37ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_61815-0.38
Bpl_scaf_61815-0.39EPPIN
Bpl_scaf_6182-0.13ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Bpl_scaf_61827-0.18
Bpl_scaf_61827-0.21
Bpl_scaf_61827-0.22DOPAMINE BETA HYDROXYLASE RELATED
Bpl_scaf_61827-0.26DOPAMINE BETA HYDROXYLASE RELATED
Bpl_scaf_61827-0.7
Bpl_scaf_61827-0.8
Bpl_scaf_61827-0.9
Bpl_scaf_61838-0.0PROTEIN STAR
Bpl_scaf_6185-0.4PROTEIN HID1
Bpl_scaf_6185-2.10
Bpl_scaf_6185-2.8ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_6185-2.9POLYCYSTIN-1
Bpl_scaf_6185-3.6
Bpl_scaf_61855-0.0
Bpl_scaf_61855-0.1
Bpl_scaf_6186-0.3
Bpl_scaf_61862-0.1
Bpl_scaf_61862-0.8RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Bpl_scaf_61872-0.18
Bpl_scaf_61872-0.7AGAP005574-PA
Bpl_scaf_61879-0.5
Bpl_scaf_61879-0.6UPF0764 PROTEIN C16ORF89
Bpl_scaf_61879-1.12COLLAGEN ALPHA
Bpl_scaf_61879-1.13DUF3504 DOMAIN-CONTAINING PROTEIN
Bpl_scaf_61879-1.15COLLAGEN ALPHA
Bpl_scaf_61879-1.16ZINC FINGER PROTEIN
Bpl_scaf_61879-1.29COLLAGEN ALPHA
Bpl_scaf_61879-1.36COLLAGEN ALPHA
Bpl_scaf_6189-0.0
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