About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8025569.1
CAI8025572.1
CAI8025574.1
CAI8025573.1
CAI8025575.1
CAI8025577.1
CAI8025576.1
CAI8025578.1SUPEROXIDE DISMUTASE CU-ZN -RELATED
CAI8025580.1MACOILIN
CAI8025579.1MACOILIN
CAI8025582.1MACOILIN
CAI8025581.1MACOILIN
CAI8025583.1MACOILIN
CAI8025584.1T-BOX PROTEIN-RELATED
CAI8025585.1
CAI8025592.1EH DOMAIN
CAI8025590.1EH DOMAIN
CAI8025591.1EH DOMAIN
CAI8025589.1JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE
CAI8025588.1RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
CAI8025587.1RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
CAI8025586.1C2 DOMAIN-CONTAINING PROTEIN
CAI8025593.1RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
CAI8025594.1CHARGED MULTIVESICULAR BODY PROTEIN
CAI8025595.1CHARGED MULTIVESICULAR BODY PROTEIN
CAI8025596.1FATTY ACID DESATURASE 2
CAI8025597.1FATTY ACID DESATURASE 2
CAI8025598.1FATTY ACID DESATURASE 2
CAI8025600.1
CAI8025599.1
CAI8025601.1
CAI8025602.1
CAI8025603.1
CAI8025606.1HELICASE WITH DEATH DOMAIN-RELATED
CAI8025605.1HELICASE WITH DEATH DOMAIN-RELATED
CAI8025604.1HELICASE WITH DEATH DOMAIN-RELATED
CAI8025607.1
CAI8025608.1
CAI8025609.1MCG48959-RELATED
CAI8025615.1CELL DIVISION PROTEIN KINASE
CAI8025614.1CELL DIVISION PROTEIN KINASE
CAI8025613.1CELL DIVISION PROTEIN KINASE
CAI8025612.1CELL DIVISION PROTEIN KINASE
CAI8025611.1CELL DIVISION PROTEIN KINASE
CAI8025610.1CELL DIVISION PROTEIN KINASE
CAI8025616.1WD REPEAT PROTEIN 26-RELATED
CAI8025617.1ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC
CAI8025618.1ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC
CAI8025620.1WD-REPEAT PROTEIN BING4
CAI8025619.1WD-REPEAT PROTEIN BING4
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