About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8025621.1WD-REPEAT PROTEIN BING4
CAI8025622.1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
CAI8025623.1LD33804P
CAI8025625.1NITRIC OXIDE SYNTHASE-RELATED
CAI8025628.1NITRIC OXIDE SYNTHASE-RELATED
CAI8025626.1NITRIC OXIDE SYNTHASE-RELATED
CAI8025624.1NITRIC OXIDE SYNTHASE-RELATED
CAI8025627.1NITRIC OXIDE SYNTHASE-RELATED
CAI8025629.1
CAI8025630.1
CAI8025631.1UDP-GLUCOSE 6-DEHYDROGENASE TUAD
CAI8025632.1D-GALACTONATE DEHYDRATASE-RELATED
CAI8025633.1TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS200
CAI8025635.1GLUTAMATE 5-KINASE
CAI8025634.1GLUTAMATE 5-KINASE
CAI8025636.1DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED
CAI8025638.1
CAI8025637.1
CAI8025639.1
CAI8025640.1
CAI8025643.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
CAI8025641.1
CAI8025642.1
CAI8025644.1
CAI8025645.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
CAI8025646.1
CAI8025647.1
CAI8025648.1
CAI8025649.1ANTI-SIGMA-K FACTOR RSKA
CAI8025650.1RNA POLYMERASE ECF-TYPE SIGMA FACTO
CAI8025651.1RECA
CAI8025652.1HEMOLYSIN-RELATED
CAI8025653.1DIHYDRODIPICOLINATE SYNTHASE
CAI8025654.1PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED
CAI8025655.1THIAMINE PYROPHOSPHATE ENZYMES
CAI8025656.1ACETOLACTATE SYNTHASE SMALL SUBUNIT
CAI8025657.1
CAI8025658.1
CAI8025659.1
CAI8025660.1
CAI8025661.1
CAI8025662.1CXC2 DOMAIN-CONTAINING PROTEIN
CAI8025663.1CXC2 DOMAIN-CONTAINING PROTEIN
CAI8025664.1
CAI8025665.1
CAI8025666.1ATP-BINDING CASSETTE SUB-FAMILY B
CAI8025668.1BLR3401 PROTEIN
CAI8025667.1BLR3401 PROTEIN
CAI8025669.1CHOLINE MONOOXYGENASE, CHLOROPLASTIC
CAI8025670.13-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED
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