Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_58266-15.9 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| Bpl_scaf_58266-16.10 | AUTOPHAGY-RELATED 2, ISOFORM A |
| Bpl_scaf_58266-16.4 | AGAP008170-PA |
| Bpl_scaf_58266-16.9 | AUTOPHAGY-RELATED 2, ISOFORM A |
| Bpl_scaf_58266-17.11 | RIBONUCLEASE Y |
| Bpl_scaf_58266-17.5 | UNCHARACTERIZED |
| Bpl_scaf_58266-17.7 | KICSTOR COMPLEX PROTEIN KAPTIN |
| Bpl_scaf_58266-18.16 | |
| Bpl_scaf_58266-18.18 | DYNEIN HEAVY CHAIN |
| Bpl_scaf_58266-18.19 | UNCHARACTERIZED |
| Bpl_scaf_58266-18.4 | DYNEIN HEAVY CHAIN |
| Bpl_scaf_58266-19.5 | UNCHARACTERIZED |
| Bpl_scaf_58266-2.19 | PERICENTRIN-LIKE PROTEIN, ISOFORM F |
| Bpl_scaf_58266-2.28 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_58266-20.15 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Bpl_scaf_58266-20.17 | REGULATOR OF G-PROTEIN SIGNALING 22 |
| Bpl_scaf_58266-20.20 | |
| Bpl_scaf_58266-3.11 | PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 4 PPP4R4 |
| Bpl_scaf_58266-4.10 | ZINC FINGER PROTEIN 200 |
| Bpl_scaf_58266-4.9 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| Bpl_scaf_58266-5.3 | HOMEOBOX PROTEIN |
| Bpl_scaf_58266-6.11 | BOMBESIN RECEPTOR-ACTIVATED PROTEIN C6ORF89 |
| Bpl_scaf_58266-6.4 | TRANSMEMBRANE PROTEIN 179 |
| Bpl_scaf_58266-6.6 | PRE-MRNA PROCESSING PROTEIN PRP39-RELATED |
| Bpl_scaf_58266-7.5 | 26S PROTEASOME REGULATORY SUBUNIT |
| Bpl_scaf_58266-7.6 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| Bpl_scaf_58266-8.4 | H2.0-LIKE HOMEOBOX PROTEIN |
| Bpl_scaf_58266-8.6 | YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP |
| Bpl_scaf_58266-9.16 | |
| Bpl_scaf_58266-9.19 | ALPHA-TECTORIN-RELATED |
| Bpl_scaf_58266-9.7 | TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED |
| Bpl_scaf_58267-0.4 | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED |
| Bpl_scaf_58268-0.13 | |
| Bpl_scaf_58268-0.14 | |
| Bpl_scaf_58268-0.6 | |
| Bpl_scaf_58269-0.23 | |
| Bpl_scaf_58269-0.25 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_58269-0.26 | SERINE-THREONINE PROTEIN KINASE |
| Bpl_scaf_58269-0.27 | |
| Bpl_scaf_58269-0.36 | SI:DKEY-31G6.6 |
| Bpl_scaf_58269-0.40 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_58278-0.0 | SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED |
| Bpl_scaf_58279-0.8 | FRIZZLED |
| Bpl_scaf_58279-3.15 | UNCHARACTERIZED |
| Bpl_scaf_58279-3.17 | PDF RECEPTOR-LIKE PROTEIN-RELATED |
| Bpl_scaf_58279-3.18 | TRANSMEMBRANE CHANNEL-RELATED |
| Bpl_scaf_58279-3.4 | |
| Bpl_scaf_58283-0.2 | PERFORIN-LIKE PROTEIN 1 |
| Bpl_scaf_58285-0.0 | |
| Bpl_scaf_58289-0.1 |
