Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_5821-5.25 | |
| Bpl_scaf_5821-5.7 | |
| Bpl_scaf_58211-0.2 | HISTONE H4 |
| Bpl_scaf_58215-0.5 | |
| Bpl_scaf_58215-0.6 | ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE |
| Bpl_scaf_58215-1.10 | SH3 DOMAIN-CONTAINING |
| Bpl_scaf_58215-1.11 | RAI16 PROTEIN-RELATED |
| Bpl_scaf_58215-1.8 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_58215-1.9 | |
| Bpl_scaf_58215-2.13 | TRANSMEMBRANE PROTEIN KIAA1109 |
| Bpl_scaf_58215-2.19 | TRANSMEMBRANE PROTEIN KIAA1109 |
| Bpl_scaf_58215-2.23 | |
| Bpl_scaf_58215-2.26 | TRANSMEMBRANE PROTEIN KIAA1109 |
| Bpl_scaf_58215-2.29 | TRANSMEMBRANE PROTEIN KIAA1109 |
| Bpl_scaf_58218-0.0 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
| Bpl_scaf_5822-0.10 | |
| Bpl_scaf_5822-0.5 | |
| Bpl_scaf_5822-0.8 | PROTEIN TORNADO 1 |
| Bpl_scaf_58220-0.3 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_58225-0.3 | |
| Bpl_scaf_58225-2.15 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Bpl_scaf_58225-2.7 | PHOSPHATIDYLINOSITOL SYNTHASE |
| Bpl_scaf_58225-3.11 | OVARIAN CARCINOMA ANTIGEN CA125-RELATED |
| Bpl_scaf_58225-3.27 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Bpl_scaf_58225-3.29 | PUR-TRANSCRIPTIONAL ACTIVATOR |
| Bpl_scaf_58225-3.30 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Bpl_scaf_58225-3.4 | |
| Bpl_scaf_58225-3.5 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_58266-0.2 | |
| Bpl_scaf_58266-0.5 | |
| Bpl_scaf_58266-10.4 | BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A |
| Bpl_scaf_58266-10.5 | |
| Bpl_scaf_58266-11.24 | MALATE DEHYDROGENASE |
| Bpl_scaf_58266-11.25 | MITOCHONDRIAL RIBOSOMAL PROTEIN S18 |
| Bpl_scaf_58266-11.26 | SJOEGREN SYNDROME/SCLERODERMA AUTOANTIGEN 1 |
| Bpl_scaf_58266-11.27 | URIDINE DIPHOSPHATE GLUCOSE PYROPHOSPHATASE |
| Bpl_scaf_58266-11.9 | CARRIER DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_58266-12.3 | |
| Bpl_scaf_58266-12.36 | CYTOCHROME P450 |
| Bpl_scaf_58266-12.4 | DIMETHYLANILINE MONOOXYGENASE |
| Bpl_scaf_58266-12.5 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Bpl_scaf_58266-13.13 | |
| Bpl_scaf_58266-13.14 | CYTOCHROME P450 FAMILY 4 |
| Bpl_scaf_58266-13.15 | |
| Bpl_scaf_58266-13.21 | TRANSMEMBRANE PROTEIN 260 |
| Bpl_scaf_58266-14.7 | AXIN INTERACTOR, DORSALIZATION-ASSOCIATED PROTEIN |
| Bpl_scaf_58266-14.8 | EWING'S TUMOR-ASSOCIATED ANTIGEN 1 ETAA1 |
| Bpl_scaf_58266-14.9 | PEROXIREDOXIN |
| Bpl_scaf_58266-15.5 | EG:114D9.1 PROTEIN-RELATED |
| Bpl_scaf_58266-15.8 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
