Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_027045-T1 | MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN |
LLU|FUN_027046-T1 | |
LLU|FUN_027047-T1 | |
LLU|FUN_027048-T1 | MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN |
LLU|FUN_027049-T1 | |
LLU|FUN_027050-T1 | |
LLU|FUN_027051-T1 | ENVOPLAKIN |
LLU|FUN_027052-T1 | |
LLU|FUN_027053-T1 | |
LLU|FUN_027054-T1 | |
LLU|FUN_027055-T1 | SOX TRANSCRIPTION FACTOR |
LLU|FUN_027056-T1 | AURORA KINASE A-INTERACTING PROTEIN |
LLU|FUN_027057-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
LLU|FUN_027058-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
LLU|FUN_027059-T1 | |
LLU|FUN_027060-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
LLU|FUN_027061-T1 | IMPORTIN BETA |
LLU|FUN_027062-T1 | 1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE |
LLU|FUN_027064-T1 | |
LLU|FUN_027065-T1 | |
LLU|FUN_027066-T1 | |
LLU|FUN_027067-T1 | |
LLU|FUN_027068-T1 | |
LLU|FUN_027071-T1 | |
LLU|FUN_027072-T1 | |
LLU|FUN_027073-T1 | |
LLU|FUN_027075-T1 | |
LLU|FUN_027076-T1 | |
LLU|FUN_027077-T1 | |
LLU|FUN_027078-T1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
LLU|FUN_027079-T1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
LLU|FUN_027080-T1 | |
LLU|FUN_027081-T1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28 |
LLU|FUN_027082-T1 | PROSTATE APOPTOSIS RESPONSE PROTEIN PAR-4 |
LLU|FUN_027083-T1 | A-KINASE-INTERACTING PROTEIN 1 |
LLU|FUN_027084-T1 | SERINE PROTEASE INHIBITOR, SERPIN |
LLU|FUN_027085-T1 | |
LLU|FUN_027086-T1 | |
LLU|FUN_027087-T1 | SERINE PROTEASE INHIBITOR, SERPIN |
LLU|FUN_027088-T1 | SERINE PROTEASE INHIBITOR, SERPIN |
LLU|FUN_027089-T1 | SERINE PROTEASE INHIBITOR, SERPIN |
LLU|FUN_027090-T1 | |
LLU|FUN_027091-T1 | SERINE PROTEASE INHIBITOR, SERPIN |
LLU|FUN_027092-T1 | SERINE PROTEASE INHIBITOR, SERPIN |
LLU|FUN_027093-T1 | |
LLU|FUN_027094-T1 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7 |
LLU|FUN_027095-T1 | GC-RICH SEQUENCE DNA-BINDING FACTOR |
LLU|FUN_027096-T1 | SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 1 |
LLU|FUN_027097-T1 | |
LLU|FUN_027098-T1 |