Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_027099-T1 | |
LLU|FUN_027100-T1 | RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG |
LLU|FUN_027101-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_027102-T1 | |
LLU|FUN_027103-T1 | BETA-1,4-GLUCURONYLTRANSFERASE 1 |
LLU|FUN_027104-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_027105-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 29 |
LLU|FUN_027106-T1 | TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE |
LLU|FUN_027107-T1 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
LLU|FUN_027108-T1 | |
LLU|FUN_027109-T1 | TRANSMEMBRANE PROTEIN 196 |
LLU|FUN_027110-T1 | |
LLU|FUN_027111-T1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
LLU|FUN_027112-T1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
LLU|FUN_027113-T1 | |
LLU|FUN_027114-T1 | |
LLU|FUN_027115-T1 | |
LLU|FUN_027116-T1 | |
LLU|FUN_027117-T1 | |
LLU|FUN_027118-T1 | |
LLU|FUN_027119-T1 | |
LLU|FUN_027120-T1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 |
LLU|FUN_027121-T1 | |
LLU|FUN_027122-T1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
LLU|FUN_027123-T1 | A-KINASE ANCHOR PROTEIN 14 |
LLU|FUN_027124-T1 | |
LLU|FUN_027125-T1 | |
LLU|FUN_027126-T1 | CELL DIVISION CYCLE 16,23,27 |
LLU|FUN_027127-T1 | MANNOSE-6-PHOSPHATE ISOMERASE |
LLU|FUN_027128-T1 | ECTO-NOX DISULFIDE-THIOL EXCHANGER |
LLU|FUN_027129-T1 | DNA-DIRECTED RNA POLYMERASE |
LLU|FUN_027130-T1 | BETA-AMYLOID BINDING PROTEIN-RELATED |
LLU|FUN_027131-T1 | DIHYDROPTERIDINE REDUCTASE |
LLU|FUN_027132-T1 | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 |
LLU|FUN_027133-T1 | |
LLU|FUN_027134-T1 | PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
LLU|FUN_027135-T1 | ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 |
LLU|FUN_027136-T1 | |
LLU|FUN_027137-T1 | |
LLU|FUN_027138-T1 | |
LLU|FUN_027139-T1 | |
LLU|FUN_027140-T1 | MATRIX METALLOPROTEINASE |
LLU|FUN_027141-T1 | |
LLU|FUN_027142-T1 | |
LLU|FUN_027143-T1 | UROPORPHYRINOGEN III SYNTHASE |
LLU|FUN_027144-T1 | |
LLU|FUN_027145-T1 | |
LLU|FUN_027146-T1 | ZINC FINGER PROTEIN |
LLU|FUN_027147-T1 | |
LLU|FUN_027148-T1 |