About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_027099-T1
LLU|FUN_027100-T1RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG
LLU|FUN_027101-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_027102-T1
LLU|FUN_027103-T1BETA-1,4-GLUCURONYLTRANSFERASE 1
LLU|FUN_027104-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
LLU|FUN_027105-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 29
LLU|FUN_027106-T1TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE
LLU|FUN_027107-T1ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN
LLU|FUN_027108-T1
LLU|FUN_027109-T1TRANSMEMBRANE PROTEIN 196
LLU|FUN_027110-T1
LLU|FUN_027111-T1NUCLEAR EXPORT MEDIATOR FACTOR NEMF
LLU|FUN_027112-T1NUCLEAR EXPORT MEDIATOR FACTOR NEMF
LLU|FUN_027113-T1
LLU|FUN_027114-T1
LLU|FUN_027115-T1
LLU|FUN_027116-T1
LLU|FUN_027117-T1
LLU|FUN_027118-T1
LLU|FUN_027119-T1
LLU|FUN_027120-T1CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2
LLU|FUN_027121-T1
LLU|FUN_027122-T1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
LLU|FUN_027123-T1A-KINASE ANCHOR PROTEIN 14
LLU|FUN_027124-T1
LLU|FUN_027125-T1
LLU|FUN_027126-T1CELL DIVISION CYCLE 16,23,27
LLU|FUN_027127-T1MANNOSE-6-PHOSPHATE ISOMERASE
LLU|FUN_027128-T1ECTO-NOX DISULFIDE-THIOL EXCHANGER
LLU|FUN_027129-T1DNA-DIRECTED RNA POLYMERASE
LLU|FUN_027130-T1BETA-AMYLOID BINDING PROTEIN-RELATED
LLU|FUN_027131-T1DIHYDROPTERIDINE REDUCTASE
LLU|FUN_027132-T1E3 UBIQUITIN-PROTEIN LIGASE KCMF1
LLU|FUN_027133-T1
LLU|FUN_027134-T1PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN
LLU|FUN_027135-T1ERYTHROID DIFFERENTIATION-RELATED FACTOR 1
LLU|FUN_027136-T1
LLU|FUN_027137-T1
LLU|FUN_027138-T1
LLU|FUN_027139-T1
LLU|FUN_027140-T1MATRIX METALLOPROTEINASE
LLU|FUN_027141-T1
LLU|FUN_027142-T1
LLU|FUN_027143-T1UROPORPHYRINOGEN III SYNTHASE
LLU|FUN_027144-T1
LLU|FUN_027145-T1
LLU|FUN_027146-T1ZINC FINGER PROTEIN
LLU|FUN_027147-T1
LLU|FUN_027148-T1
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