About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_018909-T1
LLU|FUN_018910-T1MIP11318P
LLU|FUN_018911-T1
LLU|FUN_018912-T1
LLU|FUN_018913-T1TYROSINE-PROTEIN KINASE
LLU|FUN_018914-T1TENASCIN
LLU|FUN_018915-T1GLYCOSIDASE FAMILY 31
LLU|FUN_018916-T1T-BOX PROTEIN-RELATED
LLU|FUN_018917-T1
LLU|FUN_018918-T1
LLU|FUN_018919-T1
LLU|FUN_018920-T1
LLU|FUN_018921-T1IRE1-RELATED
LLU|FUN_018922-T1MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
LLU|FUN_018923-T1WD REPEAT-CONTAINING PROTEIN 36
LLU|FUN_018924-T1
LLU|FUN_018925-T1
LLU|FUN_018926-T1
LLU|FUN_018927-T1
LLU|FUN_018928-T1RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED
LLU|FUN_018929-T1
LLU|FUN_018930-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9
LLU|FUN_018931-T1
LLU|FUN_018932-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_018933-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_018934-T1NEURALIZED
LLU|FUN_018935-T1NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER
LLU|FUN_018936-T1GTP-BINDING PROTEIN ALPHA SUBUNIT
LLU|FUN_018937-T1
LLU|FUN_018938-T1GTP-BINDING PROTEIN ALPHA SUBUNIT
LLU|FUN_018939-T1GTP-BINDING PROTEIN ALPHA SUBUNIT
LLU|FUN_018940-T1
LLU|FUN_018941-T1MYOTROPHIN
LLU|FUN_018942-T1
LLU|FUN_018943-T1UBIQUITIN-CONJUGATING ENZYME E2
LLU|FUN_018944-T1PIG-M MANNOSYLTRANSFERASE
LLU|FUN_018945-T1ZINC FINGER PROTEIN
LLU|FUN_018946-T1
LLU|FUN_018947-T1AGAP000281-PA
LLU|FUN_018948-T1MONOCARBOXYLATE TRANSPORTER
LLU|FUN_018949-T1
LLU|FUN_018950-T1BONUS, ISOFORM C-RELATED
LLU|FUN_018951-T1FUMARATE HYDRATASE-RELATED
LLU|FUN_018952-T1PROTEIN GAMETE EXPRESSED 1
LLU|FUN_018953-T1
LLU|FUN_018954-T1
LLU|FUN_018955-T1
LLU|FUN_018956-T1
LLU|FUN_018957-T1BETA-1,4-GALACTOSYLTRANSFERASE
LLU|FUN_018958-T1
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