About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_018859-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
LLU|FUN_018860-T1
LLU|FUN_018861-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
LLU|FUN_018862-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
LLU|FUN_018863-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
LLU|FUN_018864-T1
LLU|FUN_018865-T1RAN BINDING PROTEIN 9-RELATED
LLU|FUN_018866-T1DNA POLYMERASE ZETA CATALYTIC SUBUNIT
LLU|FUN_018867-T1SUPEROXIDE DISMUTASE CU-ZN -RELATED
LLU|FUN_018868-T1EXPORTIN 4,7-RELATED
LLU|FUN_018869-T1EXPORTIN 4,7-RELATED
LLU|FUN_018870-T1
LLU|FUN_018871-T1SERINE/THREONINE-PROTEIN KINASE
LLU|FUN_018872-T1UPF0240 PROTEIN
LLU|FUN_018873-T1OS05G0521000 PROTEIN
LLU|FUN_018874-T1
LLU|FUN_018875-T1UNCHARACTERIZED
LLU|FUN_018876-T1PLEXIN
LLU|FUN_018877-T12'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1
LLU|FUN_018878-T1
LLU|FUN_018879-T1UNCHARACTERIZED
LLU|FUN_018880-T1TRANSMEMBRANE PROTEIN
LLU|FUN_018881-T1
LLU|FUN_018882-T1
LLU|FUN_018883-T1
LLU|FUN_018884-T1ELECTRON TRANSPORT OXIDOREDUCTASE
LLU|FUN_018885-T1ELECTRON TRANSPORT OXIDOREDUCTASE
LLU|FUN_018886-T1DNA-DIRECTED RNA POLYMERASE
LLU|FUN_018887-T1HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN
LLU|FUN_018888-T1METALLOPROTEASE
LLU|FUN_018889-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_018890-T1
LLU|FUN_018891-T1
LLU|FUN_018892-T1NUCLEOTIDE KINASE
LLU|FUN_018893-T1NUCLEOTIDE KINASE
LLU|FUN_018894-T1GPI-ANCHOR TRANSAMIDASE
LLU|FUN_018895-T1
LLU|FUN_018896-T1
LLU|FUN_018897-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
LLU|FUN_018898-T1CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT BETA
LLU|FUN_018899-T1
LLU|FUN_018900-T1
LLU|FUN_018901-T1
LLU|FUN_018902-T1SERYL-TRNA SYNTHETASE
LLU|FUN_018903-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G
LLU|FUN_018904-T1PROTEIN C10
LLU|FUN_018905-T1HOMEOBOX PROTEIN ARISTALESS
LLU|FUN_018906-T1
LLU|FUN_018907-T1DNA POLYMERASE ALPHA CATALYTIC SUBUNIT
LLU|FUN_018908-T1CYTIDYLYLTRANSFERASE
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