Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_018859-T1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
LLU|FUN_018860-T1 | |
LLU|FUN_018861-T1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
LLU|FUN_018862-T1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
LLU|FUN_018863-T1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
LLU|FUN_018864-T1 | |
LLU|FUN_018865-T1 | RAN BINDING PROTEIN 9-RELATED |
LLU|FUN_018866-T1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
LLU|FUN_018867-T1 | SUPEROXIDE DISMUTASE CU-ZN -RELATED |
LLU|FUN_018868-T1 | EXPORTIN 4,7-RELATED |
LLU|FUN_018869-T1 | EXPORTIN 4,7-RELATED |
LLU|FUN_018870-T1 | |
LLU|FUN_018871-T1 | SERINE/THREONINE-PROTEIN KINASE |
LLU|FUN_018872-T1 | UPF0240 PROTEIN |
LLU|FUN_018873-T1 | OS05G0521000 PROTEIN |
LLU|FUN_018874-T1 | |
LLU|FUN_018875-T1 | UNCHARACTERIZED |
LLU|FUN_018876-T1 | PLEXIN |
LLU|FUN_018877-T1 | 2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1 |
LLU|FUN_018878-T1 | |
LLU|FUN_018879-T1 | UNCHARACTERIZED |
LLU|FUN_018880-T1 | TRANSMEMBRANE PROTEIN |
LLU|FUN_018881-T1 | |
LLU|FUN_018882-T1 | |
LLU|FUN_018883-T1 | |
LLU|FUN_018884-T1 | ELECTRON TRANSPORT OXIDOREDUCTASE |
LLU|FUN_018885-T1 | ELECTRON TRANSPORT OXIDOREDUCTASE |
LLU|FUN_018886-T1 | DNA-DIRECTED RNA POLYMERASE |
LLU|FUN_018887-T1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
LLU|FUN_018888-T1 | METALLOPROTEASE |
LLU|FUN_018889-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_018890-T1 | |
LLU|FUN_018891-T1 | |
LLU|FUN_018892-T1 | NUCLEOTIDE KINASE |
LLU|FUN_018893-T1 | NUCLEOTIDE KINASE |
LLU|FUN_018894-T1 | GPI-ANCHOR TRANSAMIDASE |
LLU|FUN_018895-T1 | |
LLU|FUN_018896-T1 | |
LLU|FUN_018897-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_018898-T1 | CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT BETA |
LLU|FUN_018899-T1 | |
LLU|FUN_018900-T1 | |
LLU|FUN_018901-T1 | |
LLU|FUN_018902-T1 | SERYL-TRNA SYNTHETASE |
LLU|FUN_018903-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G |
LLU|FUN_018904-T1 | PROTEIN C10 |
LLU|FUN_018905-T1 | HOMEOBOX PROTEIN ARISTALESS |
LLU|FUN_018906-T1 | |
LLU|FUN_018907-T1 | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT |
LLU|FUN_018908-T1 | CYTIDYLYLTRANSFERASE |