Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_018653-T1 | |
LLU|FUN_018654-T1 | UNCHARACTERIZED |
LLU|FUN_018655-T1 | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX19 |
LLU|FUN_018656-T1 | MYOTROPHIN |
LLU|FUN_018657-T1 | IRE1-RELATED |
LLU|FUN_018658-T1 | TEX2 PROTEIN-RELATED |
LLU|FUN_018659-T1 | TRINUCLEOTIDE REPEAT-CONTAINING GENE 6 |
LLU|FUN_018660-T1 | NUCLEAR HORMONE RECEPTOR HR3-RELATED |
LLU|FUN_018661-T1 | UNCHARACTERIZED |
LLU|FUN_018662-T1 | PROTEIN DISULFIDE ISOMERASE |
LLU|FUN_018664-T1 | |
LLU|FUN_018665-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
LLU|FUN_018666-T1 | |
LLU|FUN_018667-T1 | |
LLU|FUN_018668-T1 | |
LLU|FUN_018669-T1 | |
LLU|FUN_018670-T1 | |
LLU|FUN_018671-T1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
LLU|FUN_018672-T1 | |
LLU|FUN_018673-T1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
LLU|FUN_018674-T1 | |
LLU|FUN_018675-T1 | |
LLU|FUN_018676-T1 | IRE1-RELATED |
LLU|FUN_018677-T1 | |
LLU|FUN_018678-T1 | |
LLU|FUN_018679-T1 | |
LLU|FUN_018680-T1 | |
LLU|FUN_018681-T1 | |
LLU|FUN_018682-T1 | |
LLU|FUN_018683-T1 | |
LLU|FUN_018684-T1 | |
LLU|FUN_018685-T1 | |
LLU|FUN_018686-T1 | |
LLU|FUN_018687-T1 | ALDO/KETO REDUCTASE |
LLU|FUN_018688-T1 | BOMBESIN RECEPTOR-ACTIVATED PROTEIN C6ORF89 |
LLU|FUN_018689-T1 | NONSYNDROMIC HEARING IMPAIRMENT PROTEIN |
LLU|FUN_018690-T1 | 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED |
LLU|FUN_018691-T1 | |
LLU|FUN_018692-T1 | 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE |
LLU|FUN_018693-T1 | |
LLU|FUN_018696-T1 | |
LLU|FUN_018697-T1 | NUCLEAR HORMONE RECEPTOR |
LLU|FUN_018698-T1 | |
LLU|FUN_018699-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
LLU|FUN_018700-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
LLU|FUN_018701-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
LLU|FUN_018702-T1 | OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED |
LLU|FUN_018703-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
LLU|FUN_018704-T1 | |
LLU|FUN_018705-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |