Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s043.g0160.t1 | |
| Lsat_s043.g0161.t1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| Lsat_s043.g0162.t1 | 39S RIBOSOMAL PROTEIN L32, MITOCHONDRIAL |
| Lsat_s043.g0163.t1 | UNCHARACTERIZED |
| Lsat_s043.g0164.t1 | SERINE-THREONINE PROTEIN KINASE |
| Lsat_s043.g0165.t1 | VACUOLAR CALCIUM ION TRANSPORTER |
| Lsat_s043.g0166.t1 | ASPARTYL AMINOPEPTIDASE |
| Lsat_s043.g0167.t1 | |
| Lsat_s043.g0168.t1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Lsat_s043.g0169.t1 | |
| Lsat_s043.g0170.t1 | C2H2 ZINC FINGER CGI-62-RELATED |
| Lsat_s043.g0171.t1 | MYOTUBULARIN-RELATED |
| Lsat_s043.g0172.t1 | VACUOLAR PROTEIN 8 |
| Lsat_s043.g0173.t1 | |
| Lsat_s043.g0174.t1 | |
| Lsat_s043.g0175.t1 | PROTEIN CBG20488 |
| Lsat_s043.g0176.t1 | VACUOLAR PROTON ATPASES |
| Lsat_s043.g0177.t1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Lsat_s043.g0178.t1 | CHROMOSOME 20 ORF85 FAMILY MEMBER |
| Lsat_s043.g0179.t1 | |
| Lsat_s043.g0180.t1 | ABHYDROLASE DOMAIN-CONTAINING PROTEIN |
| Lsat_s043.g0181.t1 | |
| Lsat_s043.g0182.t1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| Lsat_s043.g0183.t1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| Lsat_s043.g0184.t1 | TRANSMEMBRANE PROTEIN |
| Lsat_s043.g0185.t1 | NINJURIN-RELATED |
| Lsat_s043.g0186.t1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| Lsat_s043.g0187.t1 | RAS-RELATED PROTEIN RAB |
| Lsat_s043.g0188.t1 | TUBULIN |
| Lsat_s043.g0189.t1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Lsat_s043.g0190.t1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Lsat_s043.g0191.t1 | TUBULIN |
| Lsat_s043.g0192.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
| Lsat_s043.g0193.t1 | CAMP-RESPONSIVE ELEMENT-BINDING PROTEIN-LIKE 2 |
| Lsat_s043.g0194.t1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Lsat_s043.g0195.t1 | ORGANIC ANION TRANSPORTER |
| Lsat_s043.g0196.t1 | |
| Lsat_s043.g0197.t1 | TRYPTASE-RELATED |
| Lsat_s043.g0198.t1 | PROLYL ENDOPEPTIDASE |
| Lsat_s043.g0199.t1 | TUDOR DOMAIN CONTAINING PROTEIN |
| Lsat_s043.g0200.t1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Lsat_s043.g0201.t1 | |
| Lsat_s043.g0202.t1 | |
| Lsat_s043.g0203.t1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Lsat_s043.g0204.t1 | |
| Lsat_s043.g0205.t1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Lsat_s043.g0206.t1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Lsat_s043.g0207.t1 | |
| Lsat_s043.g0208.t1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Lsat_s043.g0209.t1 |
