About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110 Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s044.g0031.t1
Lsat_s044.g0032.t1DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Lsat_s044.g0033.t1DNA2/NAM7 HELICASE FAMILY
Lsat_s044.g0034.t1MYB-LIKE PROTEIN V
Lsat_s044.g0035.t1
Lsat_s044.g0036.t1ATILLA, ISOFORM B-RELATED-RELATED
Lsat_s044.g0037.t126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8
Lsat_s044.g0038.t1NUCLEOTIDE KINASE
Lsat_s044.g0039.t1RAS-RELATED PROTEIN RAB
Lsat_s044.g0040.t1
Lsat_s044.g0041.t12-OXOGLUTARATE DEHYDROGENASE
Lsat_s044.g0042.t1TETRATRICOPEPTIDE REPEAT PROTEIN 8
Lsat_s044.g0043.t1ALPHA-MANNOSIDASE
Lsat_s044.g0044.t1COILED-COIL DOMAIN CONTAINING 198
Lsat_s044.g0045.t1
Lsat_s044.g0046.t1
Lsat_s044.g0047.t1CASEIN KINASE-RELATED
Lsat_s044.g0048.t1UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN
Lsat_s044.g0049.t1MUCIN-22
Lsat_s044.g0050.t1UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN
Lsat_s044.g0051.t1GTP CYCLOHYDROLASE I
Lsat_s044.g0052.t1GTP CYCLOHYDROLASE I
Lsat_s044.g0053.t1
Lsat_s044.g0054.t1STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED
Lsat_s044.g0055.t1
Lsat_s044.g0056.t1RING ZINC FINGER PROTEIN
Lsat_s044.g0057.t1SEEDY PROTEIN A/C FAMILY MEMBER
Lsat_s044.g0058.t1TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE
Lsat_s044.g0059.t1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
Lsat_s044.g0060.t1ARMADILLO-TYPE FOLD-RELATED
Lsat_s044.g0061.t1UPF0692 PROTEIN C19ORF54
Lsat_s044.g0062.t1
Lsat_s044.g0063.t1PINN
Lsat_s044.g0064.t1TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B
Lsat_s044.g0065.t1CASEIN KINASE-RELATED
Lsat_s044.g0066.t1LEUCINE-RICH REPEAT, ISOFORM F-RELATED
Lsat_s044.g0067.t1
Lsat_s044.g0068.t1KELCH REPEAT DOMAIN
Lsat_s044.g0069.t1
Lsat_s044.g0070.t1PROTEIN CBG12474
Lsat_s044.g0071.t1
Lsat_s044.g0072.t1PLAT DOMAIN-CONTAINING PROTEIN
Lsat_s044.g0073.t1PROTEIN CBG12474
Lsat_s044.g0074.t1-
Lsat_s044.g0075.t1
Lsat_s044.g0076.t1
Lsat_s044.g0077.t1SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC
Lsat_s044.g0078.t1
Lsat_s044.g0079.t1
Lsat_s044.g0080.t1TRANSLATION INITIATION FACTOR EIF3-RELATED
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