About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS18601T-CELL RECEPTOR ALPHA CHAIN V REGION-RELATED
HS18602LYSOPHOSPHATIDIC ACID RECEPTOR 5/SPHINGOSYLPHOSPHORYLCHOLINE RECEPTOR
HS18603EG:EG0003.4 PROTEIN-RELATED
HS18604DUF614 FAMILY PROTEIN-RELATED
HS18605
HS18606CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE II INHIBITOR 2
HS18607CLAUDIN
HS18608NEUROTRANSMITTER GATED ION CHANNEL
HS18609NEUROTRANSMITTER GATED ION CHANNEL
HS18610FIBROBLAST GROWTH FACTOR
HS18611
HS18612CELL FATE DETERMINING PROTEIN MAB21-RELATED
HS18613TRANSMEMBRANE PROTEIN 256
HS18614NEUROLIGIN
HS18615GTP-BINDING
HS18616GTP-BINDING
HS18617GTP-BINDING
HS18618RIBONUCLEASE P PROTEIN SUBUNIT P20
HS18619ERYTHROPOIETIN
HS18620ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS18621UFM1-SPECIFIC PROTEASE 2
HS18622ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1
HS18623ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1
HS18624GRB10 INTERACTING GYF PROTEIN
HS18625UNCHARACTERIZED
HS18626EPHRIN
HS18627REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18628HMG DOMAIN-CONTAINING PROTEIN 3
HS18629REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18630REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18631LYSINE-SPECIFIC DEMETHYLASE
HS18632TRANSMEMBRANE PROTEIN 88-RELATED
HS18633CALCIUM-BINDING PROTEIN 1-RELATED
HS18634CALCIUM-BINDING PROTEIN 1-RELATED
HS18635TUDOR DOMAIN CONTAINING PROTEIN
HS18636DYNACTIN 1-RELATED MICROTUBULE-BINDING
HS18637SARCOMA ANTIGEN NY-SAR-23
HS18638RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
HS18639B-BOX DOMAIN CONTAINING
HS18640O-GLCNACASE
HS18641SYNAPTOTAGMIN
HS18642UREA TRANSPORTER
HS18643OS02G0815200 PROTEIN
HS18644TRAF-INTERACTING PROTEIN WITH FHA DOMAIN-CONTAINING PROTEIN A FAMILY MEMBER
HS18645OS02G0815200 PROTEIN
HS18646FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN
HS18647AUGMIN SUBUNIT 4 FAMILY MEMBER
HS18648DEDICATOR OF CYTOKINESIS DOCK
HS18649DEDICATOR OF CYTOKINESIS DOCK
HS18650CYTOKINE RECEPTOR
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