About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS18751INHIBITOR OF GROWTH PROTEIN
HS18752LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN
HS18753
HS18754STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1
HS18755BOLA-LIKE PROTEIN-RELATED
HS18756ETS
HS18757GLYCOGEN PHOSPHORYLASE
HS18758RNA-BINDING PROTEIN RELATED
HS18759
HS18760OS02G0815200 PROTEIN
HS18761OS02G0815200 PROTEIN
HS18762STERILE20-LIKE KINASE, ISOFORM B-RELATED
HS18763MENIN
HS18764RETICULON-LIKE PROTEIN
HS18765SIMILAR TO RIKEN CDNA 2700081O15
HS18766SIMILAR TO RIKEN CDNA 2700081O15
HS18767ECSIT EVOLUTIONARILY CONSERVED SIGNALING INTERMEDIATE IN TOLL PATHWAYS
HS18768WD-40 REPEAT PROTEIN
HS18769METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN
HS18770CCCH ZINC FINGER/TIS11-RELATED
HS18771TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6
HS18772CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS18773
HS18774
HS18775CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS18776RAS-RELATED PROTEIN RAB
HS18777TYROSINE-PROTEIN KINASE RECEPTOR
HS18778
HS18779E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED
HS18780PROTEASE U48 CAAX PRENYL PROTEASE RCE1
HS18781
HS18782REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18783CHONDROLECTIN VARIANT CHODLFDELTAE.
HS18784NEUROPEPTIDES RECEPTOR
HS18785ZINC FINGER PROTEIN
HS18786SH3 DOMAIN AND TETRATRICOPEPTIDE REPEATS CONTAINING PROTEIN
HS18787SERINE PROTEASE FAMILY S1C HTRA-RELATED
HS18788REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18789ELECTRON TRANSPORT OXIDOREDUCTASE
HS18790UNCHARACTERIZED
HS18791LDOC1 RELATED
HS18792REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18793TRANSPOSASE, PUTATIVE-RELATED
HS18794UNCHARACTERIZED
HS18795
HS18796RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
HS18797TRANSMEMBRANE PROTEIN 242
HS18798REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18799REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS18800FI19480P1
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